Wall clock time and date at job start Mon Mar 30 2020 03:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46729 * 2 1 4 4 C 1.34780 * 119.99848 * 173.66531 * 3 2 1 5 5 O 1.21688 * 119.99714 * 5.13900 * 4 3 2 6 6 C 1.46370 * 119.99834 * 185.13506 * 4 3 2 7 7 H 1.08003 * 120.00514 * 0.02562 * 6 4 3 8 8 C 1.40050 * 120.00025 * 180.02562 * 6 4 3 9 9 N 1.30672 * 119.99735 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 120.00255 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47218 * 90.00119 * 10 8 6 12 12 H 1.48507 * 109.47284 * 209.99881 * 10 8 6 13 13 H 1.48501 * 109.47202 * 329.99992 * 10 8 6 14 14 C 1.52998 * 109.47321 * 240.00266 * 2 1 3 15 15 C 1.52989 * 117.50053 * 123.06201 * 14 2 1 16 16 C 1.52992 * 117.50186 * 54.39623 * 14 2 1 17 17 C 1.52994 * 109.46753 * 119.99760 * 2 1 3 18 18 C 1.52996 * 117.50338 * 13.75130 * 17 2 1 19 19 C 1.52996 * 117.50235 * 305.08530 * 17 2 1 20 20 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47616 * 300.00036 * 1 2 3 22 22 H 1.09001 * 109.46898 * 60.00589 * 1 2 3 23 23 H 0.97005 * 120.00041 * 353.66420 * 3 2 1 24 24 H 0.97003 * 119.99946 * 180.02562 * 9 8 6 25 25 H 1.09006 * 115.54372 * 268.73116 * 14 2 1 26 26 H 1.08998 * 117.50249 * 359.97438 * 15 14 2 27 27 H 1.09008 * 117.50182 * 145.01842 * 15 14 2 28 28 H 1.09001 * 117.50397 * 214.97925 * 16 14 2 29 29 H 1.09009 * 117.50018 * 359.97438 * 16 14 2 30 30 H 1.09002 * 115.54704 * 159.42358 * 17 2 1 31 31 H 1.08993 * 117.49863 * 359.97438 * 18 17 2 32 32 H 1.09004 * 117.50106 * 145.01897 * 18 17 2 33 33 H 1.09001 * 117.50681 * 214.98049 * 19 17 2 34 34 H 1.09005 * 117.49921 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3367 1.6299 0.1288 5 8 4.1304 0.7078 0.1510 6 6 3.8136 3.0091 0.2418 7 1 3.1091 3.8275 0.2225 8 6 5.1836 3.2677 0.3751 9 7 6.0360 2.2776 0.3981 10 14 5.7922 5.0277 0.5201 11 1 5.8317 5.4215 1.9514 12 1 7.1559 5.1292 -0.0590 13 1 4.8729 5.9317 -0.2168 14 6 2.0401 -0.7212 -1.2492 15 6 2.9736 0.0542 -2.1809 16 6 1.5308 -0.2303 -2.6058 17 6 2.0399 -0.7212 1.2492 18 6 1.0326 -1.5532 2.0453 19 6 1.5400 -0.2225 2.6065 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.3927 2.1168 -0.0927 24 1 6.9849 2.4566 0.4907 25 1 2.2173 -1.7907 -1.1351 26 1 3.2241 1.0783 -1.9042 27 1 3.7648 -0.5052 -2.6802 28 1 1.3734 -0.9766 -3.3845 29 1 0.8319 0.6063 -2.6084 30 1 3.0647 -1.0887 1.1945 31 1 0.0065 -1.5865 1.6793 32 1 1.3947 -2.4680 2.5147 33 1 2.2355 -0.2623 3.4448 34 1 0.8480 0.6198 2.6095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598380837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:55 Heat of formation + Delta-G solvation = -1.484711 kcal Electronic energy + Delta-G solvation = -16149.983215 eV Core-core repulsion = 13662.972584 eV Total energy + Delta-G solvation = -2487.010632 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98764 -37.98561 -37.06518 -34.58089 -33.80261 -30.75458 -28.12927 -26.02470 -23.27419 -22.97020 -22.14997 -21.98263 -19.42291 -19.03536 -17.49790 -17.29066 -16.37763 -15.94812 -15.79812 -14.96023 -14.56924 -14.20644 -13.74277 -13.50544 -13.06249 -12.83409 -12.79564 -12.49947 -12.24548 -12.08918 -12.04973 -11.96607 -11.90872 -11.27220 -11.14329 -10.86209 -10.73441 -10.67520 -9.45893 -9.21017 -8.17586 -6.73666 1.38763 1.39765 1.53443 2.26158 2.60432 2.88285 3.07286 3.45782 3.75687 3.79266 4.06770 4.11603 4.23661 4.30206 4.39264 4.46285 4.59506 4.77022 4.80924 4.86223 4.99479 5.02810 5.17487 5.24622 5.30124 5.31975 5.38131 5.42623 5.53333 5.56420 6.00810 6.36200 6.55227 6.97417 7.76513 8.63691 8.88516 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.009757 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.252088 B = 2869.158520 C = 3244.981593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.240 3.760 3 N -0.747 5.747 4 C 0.558 3.442 5 O -0.602 6.602 6 C -0.581 4.581 7 H 0.076 0.924 8 C 0.035 3.965 9 N -0.820 5.820 10 Si 0.984 3.016 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.252 1.252 14 C -0.147 4.147 15 C -0.178 4.178 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.178 4.178 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.386 0.614 24 H 0.269 0.731 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -2.724 -0.853 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.153 3.847 3 N -0.401 5.401 4 C 0.361 3.639 5 O -0.487 6.487 6 C -0.618 4.618 7 H 0.094 0.906 8 C -0.180 4.180 9 N -0.450 5.450 10 Si 0.805 3.195 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.176 1.176 14 C -0.166 4.166 15 C -0.215 4.215 16 C -0.190 4.190 17 C -0.178 4.178 18 C -0.192 4.192 19 C -0.215 4.215 20 H 0.107 0.893 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.219 0.781 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.248 -3.467 -0.813 11.798 hybrid contribution 0.958 1.013 0.148 1.402 sum -10.290 -2.453 -0.665 10.599 Atomic orbital electron populations 1.22088 0.91386 1.03818 1.02739 1.19023 0.93796 0.81819 0.90064 1.46066 1.07820 1.06090 1.80084 1.18038 0.80710 0.89736 0.75430 1.90574 1.55350 1.47245 1.55495 1.21456 0.93341 0.92609 1.54426 0.90629 1.26741 0.96780 1.02753 0.91715 1.70185 1.02874 1.34598 1.37329 0.85223 0.77865 0.77247 0.79210 1.19033 1.20117 1.17570 1.22541 1.04289 0.98270 0.91502 1.22734 0.93124 1.01427 1.04263 1.23025 0.95830 1.03233 0.96900 1.22364 0.97963 1.04381 0.93068 1.23256 0.99783 0.93951 1.02193 1.22752 1.03641 0.98775 0.96315 0.89323 0.91512 0.91112 0.78077 0.92135 0.88869 0.90702 0.91950 0.87488 0.88283 0.91972 0.85704 0.88662 0.91110 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 7.03 71.98 0.51 -3.11 16 2 C 0.24 8.68 0.71 3.60 0.00 8.68 16 3 N -0.75 -32.07 4.45 -427.16 -1.90 -33.97 16 4 C 0.56 30.94 5.01 86.36 0.43 31.37 16 5 O -0.60 -37.90 11.47 -4.31 -0.05 -37.95 16 6 C -0.58 -32.89 9.54 24.83 0.24 -32.66 16 7 H 0.08 3.92 7.85 -2.91 -0.02 3.90 16 8 C 0.03 1.96 5.50 85.30 0.47 2.43 16 9 N -0.82 -50.39 11.83 21.84 0.26 -50.14 16 10 Si 0.98 42.02 29.56 68.60 2.03 44.05 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 13 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 14 C -0.15 -5.49 4.82 -10.80 -0.05 -5.54 16 15 C -0.18 -7.73 8.32 30.62 0.25 -7.48 16 16 C -0.15 -4.82 9.68 30.62 0.30 -4.53 16 17 C -0.16 -6.15 4.07 -10.80 -0.04 -6.20 16 18 C -0.15 -4.33 9.66 30.62 0.30 -4.04 16 19 C -0.18 -6.13 9.84 30.62 0.30 -5.83 16 20 H 0.09 1.86 6.74 -2.39 -0.02 1.84 16 21 H 0.07 1.57 6.96 -2.39 -0.02 1.56 16 22 H 0.07 1.62 6.96 -2.39 -0.02 1.60 16 23 H 0.39 14.76 8.47 -92.70 -0.78 13.98 16 24 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 25 H 0.09 3.42 8.07 -2.38 -0.02 3.40 16 26 H 0.07 3.88 5.11 -2.39 -0.01 3.87 16 27 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.10 2.86 7.25 -2.38 -0.02 2.84 16 30 H 0.06 3.06 7.17 -2.39 -0.02 3.05 16 31 H 0.12 2.73 5.89 -2.39 -0.01 2.72 16 32 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.10 3.14 7.29 -2.38 -0.02 3.12 16 Total: -1.00 -71.76 271.42 3.35 -68.41 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.32 Total: 36.48 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 2.70 Total: -26.89 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.64 Total: -84.10 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.05 Total: -37.95 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -71.76 3.35 -68.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598380837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.925 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds