Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47691 * 274.98810 * 3 2 1 5 5 H 1.48507 * 109.47019 * 34.98719 * 3 2 1 6 6 H 1.48497 * 109.47163 * 154.98308 * 3 2 1 7 7 C 1.40048 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00440 * 186.14922 * 7 2 1 9 9 C 1.46377 * 120.00056 * 6.14879 * 7 2 1 10 10 O 1.21686 * 120.00026 * 353.93739 * 9 7 2 11 11 N 1.34774 * 119.99935 * 173.94265 * 9 7 2 12 12 C 1.46504 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46896 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.56225 * 307.67518 * 13 12 11 15 15 C 1.54986 * 110.51212 * 70.35968 * 13 12 11 16 16 C 1.54919 * 102.81971 * 156.21285 * 15 13 12 17 17 C 1.54387 * 104.22544 * 322.27583 * 16 15 13 18 18 C 1.53485 * 106.39729 * 23.55411 * 17 16 15 19 19 C 1.52574 * 121.04906 * 215.79502 * 18 17 16 20 20 C 1.52556 * 121.08686 * 144.08134 * 18 17 16 21 21 H 0.97003 * 119.99598 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00135 * 359.97438 * 11 9 7 23 23 H 1.08999 * 109.47392 * 59.99626 * 12 11 9 24 24 H 1.08998 * 109.46813 * 299.99925 * 12 11 9 25 25 H 1.08998 * 110.74681 * 37.87792 * 15 13 12 26 26 H 1.08998 * 110.89948 * 274.61737 * 15 13 12 27 27 H 1.09002 * 110.48205 * 203.59728 * 16 15 13 28 28 H 1.08994 * 110.48602 * 80.96629 * 16 15 13 29 29 H 1.08995 * 110.07321 * 264.32272 * 17 16 15 30 30 H 1.08999 * 110.11906 * 142.81259 * 17 16 15 31 31 H 1.08999 * 117.51081 * 356.96599 * 19 18 17 32 32 H 1.09001 * 117.50857 * 142.06341 * 19 18 17 33 33 H 1.09005 * 117.50476 * 217.87948 * 20 18 17 34 34 H 1.08992 * 117.50921 * 2.92781 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3830 2.1073 -1.3947 5 1 1.4950 2.6199 0.8028 6 1 3.5870 1.4119 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2158 0.0996 9 6 1.2813 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9609 -3.6341 -0.2602 12 6 1.2347 -4.8990 -0.3972 13 6 2.2347 -6.0505 -0.5201 14 1 2.9579 -5.8469 -1.3098 15 6 2.9574 -6.2886 0.8301 16 6 3.4066 -7.7674 0.7235 17 6 2.2378 -8.4675 -0.0025 18 6 1.5005 -7.3756 -0.7899 19 6 -0.0164 -7.4095 -0.9505 20 6 0.8899 -7.6667 -2.1573 21 1 -0.4850 0.8401 0.0004 22 1 2.9309 -3.6294 -0.2590 23 1 0.6096 -4.8644 -1.2895 24 1 0.6070 -5.0545 0.4802 25 1 2.2700 -6.1531 1.6651 26 1 3.8196 -5.6295 0.9311 27 1 3.5499 -8.1950 1.7159 28 1 4.3220 -7.8467 0.1373 29 1 1.5653 -8.9233 0.7241 30 1 2.6209 -9.2265 -0.6846 31 1 -0.5484 -8.2626 -0.5295 32 1 -0.5479 -6.4586 -0.9137 33 1 0.9543 -6.8849 -2.9142 34 1 0.9545 -8.6888 -2.5302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600802253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = -35.729517 kcal Electronic energy + Delta-G solvation = -15250.879307 eV Core-core repulsion = 12762.383709 eV Total energy + Delta-G solvation = -2488.495598 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45400 -36.99632 -34.14584 -33.15523 -32.22192 -29.28518 -26.44500 -25.58277 -23.36504 -22.25445 -20.51860 -19.47287 -18.40638 -16.95777 -15.65424 -15.29799 -14.93066 -14.54416 -14.16827 -13.77338 -13.70118 -12.67571 -12.60723 -12.31727 -11.95967 -11.39670 -11.27972 -11.11127 -11.00020 -10.91587 -10.65737 -10.44964 -10.38142 -10.29688 -10.16281 -10.04862 -9.43470 -8.81206 -7.55923 -7.41868 -6.15484 -4.59311 3.16068 3.23042 3.26698 3.87971 4.13761 4.50463 4.63089 4.71930 4.88423 4.96723 5.22263 5.27676 5.34190 5.48995 5.71466 5.75408 5.77573 5.83580 5.92359 5.96738 5.99843 6.13707 6.17043 6.23926 6.32791 6.36402 6.44007 6.62545 6.75246 7.47368 7.99205 8.17431 8.38596 9.06594 9.60553 10.64571 10.83819 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048357 B = 0.006034 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.884960 B = 4639.432690 C = 4998.953714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.767 5.767 12 C 0.142 3.858 13 C -0.067 4.067 14 H 0.078 0.922 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.122 4.122 19 C -0.172 4.172 20 C -0.173 4.173 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -13.614 -0.819 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.017 3.983 13 C -0.086 4.086 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.160 4.160 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.209 4.209 20 C -0.210 4.210 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.920 -13.520 -0.809 14.410 hybrid contribution 0.863 0.768 -0.081 1.158 sum 5.783 -12.753 -0.890 14.031 Atomic orbital electron populations 1.70037 1.07082 1.27153 1.35524 1.25704 0.94576 1.00263 0.92632 0.86377 0.80239 0.81586 0.78637 1.19841 1.20481 1.18912 1.20900 0.94066 0.89700 1.53775 0.91466 1.18212 0.87136 0.82468 0.76367 1.90590 1.14149 1.86544 1.55303 1.46125 1.08491 1.05854 1.81767 1.20928 0.93662 0.83590 1.00120 1.21698 0.96865 0.92433 0.97609 0.90387 1.22515 1.00013 0.95403 0.97269 1.22337 0.97678 0.96125 0.99868 1.21617 0.96599 0.96165 0.97949 1.21694 0.94937 0.96486 0.99123 1.23079 0.92407 1.03527 1.01877 1.22931 1.04669 1.02040 0.91311 0.92188 0.79009 0.93675 0.93325 0.91169 0.91375 0.91860 0.91799 0.91802 0.91981 0.89162 0.87813 0.88767 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.51 11.85 55.55 0.66 -22.85 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.42 29.56 -169.99 -5.03 15.39 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -15.77 9.53 -35.63 -0.34 -16.11 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.17 7.74 -12.99 -0.10 16.07 16 10 O -0.58 -19.36 15.04 5.20 0.08 -19.28 16 11 N -0.77 -17.58 5.45 -61.72 -0.34 -17.92 16 12 C 0.14 2.81 3.89 -4.04 -0.02 2.80 16 13 C -0.07 -1.01 2.76 -89.11 -0.25 -1.25 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.55 6.21 -24.67 -0.15 -1.70 16 16 C -0.12 -1.35 6.84 -24.99 -0.17 -1.52 16 17 C -0.09 -0.96 6.55 -25.75 -0.17 -1.13 16 18 C -0.12 -1.60 2.40 -154.25 -0.37 -1.97 16 19 C -0.17 -2.30 9.56 -26.90 -0.26 -2.56 16 20 C -0.17 -2.13 10.26 -26.91 -0.28 -2.41 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 22 H 0.38 7.63 8.42 -40.82 -0.34 7.29 16 23 H 0.05 0.96 7.23 -51.93 -0.38 0.59 16 24 H 0.05 1.04 7.98 -51.93 -0.41 0.63 16 25 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.60 6.42 -51.93 -0.33 1.27 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 281.88 15.07 4.25 4.25 Total: -1.00 -33.85 281.88 -7.80 -41.65 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.23 Total: 6.14 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.19 Total: -7.38 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.32 Total: -40.77 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.85 -7.80 -41.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600802253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.921 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds