Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47691 * 274.98810 * 3 2 1 5 5 H 1.48507 * 109.47019 * 34.98719 * 3 2 1 6 6 H 1.48497 * 109.47163 * 154.98308 * 3 2 1 7 7 C 1.40048 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00440 * 186.14922 * 7 2 1 9 9 C 1.46377 * 120.00056 * 6.14879 * 7 2 1 10 10 O 1.21686 * 120.00026 * 353.93739 * 9 7 2 11 11 N 1.34774 * 119.99935 * 173.94265 * 9 7 2 12 12 C 1.46504 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46896 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.56225 * 307.67518 * 13 12 11 15 15 C 1.54986 * 110.51212 * 70.35968 * 13 12 11 16 16 C 1.54919 * 102.81971 * 156.21285 * 15 13 12 17 17 C 1.54387 * 104.22544 * 322.27583 * 16 15 13 18 18 C 1.53485 * 106.39729 * 23.55411 * 17 16 15 19 19 C 1.52574 * 121.04906 * 215.79502 * 18 17 16 20 20 C 1.52556 * 121.08686 * 144.08134 * 18 17 16 21 21 H 0.97003 * 119.99598 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00135 * 359.97438 * 11 9 7 23 23 H 1.08999 * 109.47392 * 59.99626 * 12 11 9 24 24 H 1.08998 * 109.46813 * 299.99925 * 12 11 9 25 25 H 1.08998 * 110.74681 * 37.87792 * 15 13 12 26 26 H 1.08998 * 110.89948 * 274.61737 * 15 13 12 27 27 H 1.09002 * 110.48205 * 203.59728 * 16 15 13 28 28 H 1.08994 * 110.48602 * 80.96629 * 16 15 13 29 29 H 1.08995 * 110.07321 * 264.32272 * 17 16 15 30 30 H 1.08999 * 110.11906 * 142.81259 * 17 16 15 31 31 H 1.08999 * 117.51081 * 356.96599 * 19 18 17 32 32 H 1.09001 * 117.50857 * 142.06341 * 19 18 17 33 33 H 1.09005 * 117.50476 * 217.87948 * 20 18 17 34 34 H 1.08992 * 117.50921 * 2.92781 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3830 2.1073 -1.3947 5 1 1.4950 2.6199 0.8028 6 1 3.5870 1.4119 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2158 0.0996 9 6 1.2813 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9609 -3.6341 -0.2602 12 6 1.2347 -4.8990 -0.3972 13 6 2.2347 -6.0505 -0.5201 14 1 2.9579 -5.8469 -1.3098 15 6 2.9574 -6.2886 0.8301 16 6 3.4066 -7.7674 0.7235 17 6 2.2378 -8.4675 -0.0025 18 6 1.5005 -7.3756 -0.7899 19 6 -0.0164 -7.4095 -0.9505 20 6 0.8899 -7.6667 -2.1573 21 1 -0.4850 0.8401 0.0004 22 1 2.9309 -3.6294 -0.2590 23 1 0.6096 -4.8644 -1.2895 24 1 0.6070 -5.0545 0.4802 25 1 2.2700 -6.1531 1.6651 26 1 3.8196 -5.6295 0.9311 27 1 3.5499 -8.1950 1.7159 28 1 4.3220 -7.8467 0.1373 29 1 1.5653 -8.9233 0.7241 30 1 2.6209 -9.2265 -0.6846 31 1 -0.5484 -8.2626 -0.5295 32 1 -0.5479 -6.4586 -0.9137 33 1 0.9543 -6.8849 -2.9142 34 1 0.9545 -8.6888 -2.5302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600802253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = -58.647852 kcal Electronic energy + Delta-G solvation = -15251.873121 eV Core-core repulsion = 12762.383709 eV Total energy + Delta-G solvation = -2489.489411 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65168 -39.08700 -35.52251 -34.81882 -34.33640 -30.85276 -28.35578 -26.83220 -24.82357 -23.33464 -21.98604 -21.17131 -19.82709 -18.77219 -17.45188 -16.91288 -16.17732 -15.97661 -15.61780 -15.44792 -15.26879 -14.37943 -14.14646 -13.60758 -13.39176 -13.09190 -12.93681 -12.68637 -12.62778 -12.35361 -12.01996 -11.93192 -11.73591 -11.61963 -11.43458 -11.11105 -10.94296 -10.49166 -9.88441 -9.49310 -8.31190 -6.86789 1.39651 1.41209 1.57423 2.24411 2.45920 2.82162 3.10763 3.53177 3.58403 3.73184 3.90295 4.00307 4.21595 4.27896 4.43795 4.50381 4.58178 4.77526 4.83417 4.93184 4.93826 4.97725 5.08580 5.15384 5.23390 5.26284 5.31013 5.35070 5.36440 5.50660 5.86567 6.22956 6.26956 6.85337 7.54796 8.47922 8.66167 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048357 B = 0.006034 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.884960 B = 4639.432690 C = 4998.953714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.753 5.753 12 C 0.150 3.850 13 C -0.061 4.061 14 H 0.086 0.914 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.186 4.186 20 C -0.161 4.161 21 H 0.275 0.725 22 H 0.395 0.605 23 H 0.023 0.977 24 H 0.025 0.975 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -14.371 -0.913 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.025 3.975 13 C -0.080 4.080 14 H 0.104 0.896 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.223 4.223 20 C -0.197 4.197 21 H 0.085 0.915 22 H 0.228 0.772 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.501 -14.329 -0.905 16.199 hybrid contribution 0.027 0.971 -0.056 0.973 sum 7.528 -13.357 -0.961 15.363 Atomic orbital electron populations 1.70208 1.09689 1.28984 1.36480 1.27033 0.95516 1.05121 0.91115 0.84963 0.78920 0.74903 0.79203 1.18744 1.19701 1.16979 1.21450 0.95257 0.90268 1.54165 0.89314 1.18680 0.86793 0.84435 0.76182 1.90542 1.16385 1.87685 1.57793 1.45812 1.09247 1.05592 1.80087 1.20949 0.94489 0.84125 0.97936 1.21651 0.95947 0.91318 0.99084 0.89622 1.22513 0.99534 0.97966 0.95391 1.22320 0.98110 0.93580 1.01115 1.21641 0.96423 0.95654 0.98148 1.21786 0.94498 0.96155 1.00187 1.23050 0.92836 1.02746 1.03663 1.22997 1.03055 1.03178 0.90515 0.91549 0.77165 0.95903 0.95644 0.92924 0.91003 0.90315 0.90285 0.91194 0.89845 0.87236 0.91126 0.89973 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.79 11.85 21.84 0.26 -51.53 16 2 C 0.03 1.54 5.49 85.30 0.47 2.01 16 3 Si 1.00 41.59 29.56 68.60 2.03 43.61 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.57 -33.47 9.53 24.83 0.24 -33.23 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.53 32.36 7.74 86.36 0.67 33.02 16 10 O -0.64 -44.56 15.04 -4.31 -0.06 -44.63 16 11 N -0.75 -35.51 5.45 -467.40 -2.55 -38.05 16 12 C 0.15 6.21 3.89 86.38 0.34 6.54 16 13 C -0.06 -1.81 2.76 -9.82 -0.03 -1.84 16 14 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.12 -3.00 6.21 31.93 0.20 -2.80 16 16 C -0.11 -2.14 6.84 31.72 0.22 -1.92 16 17 C -0.08 -1.55 6.55 31.23 0.20 -1.35 16 18 C -0.13 -3.14 2.40 -52.01 -0.12 -3.27 16 19 C -0.19 -4.99 9.56 30.48 0.29 -4.70 16 20 C -0.16 -3.75 10.26 30.48 0.31 -3.44 16 21 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 22 H 0.39 15.92 8.42 -92.71 -0.78 15.14 16 23 H 0.02 1.04 7.23 -2.39 -0.02 1.02 16 24 H 0.03 1.16 7.98 -2.39 -0.02 1.14 16 25 H 0.05 1.53 7.96 -2.39 -0.02 1.52 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.36 6.42 -2.39 -0.02 2.34 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.57 281.88 2.76 -73.81 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.30 Total: 27.75 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 2.78 Total: -10.96 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.29 Total: -89.58 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.06 Total: -44.63 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -76.57 2.76 -73.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600802253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.164 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds