Wall clock time and date at job start Mon Mar 30 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51578 * 135.78278 * 2 1 4 4 C 1.53834 * 86.76010 * 154.84154 * 3 2 1 5 5 C 1.52998 * 113.66007 * 270.21747 * 4 3 2 6 6 C 1.50697 * 113.65998 * 139.26666 * 4 3 2 7 7 O 1.21285 * 120.00307 * 233.86684 * 6 4 3 8 8 N 1.34784 * 120.00140 * 53.86596 * 6 4 3 9 9 C 1.46493 * 119.99432 * 3.50316 * 8 6 4 10 10 C 1.46492 * 120.00050 * 183.77457 * 8 6 4 11 11 C 1.50706 * 109.47381 * 269.72645 * 10 8 6 12 12 H 1.08001 * 119.99301 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00257 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99831 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46848 * 59.99811 * 15 13 11 17 17 H 1.48491 * 109.46888 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46946 * 300.00157 * 15 13 11 19 19 C 1.51579 * 135.78154 * 179.97438 * 2 1 3 20 20 H 1.07994 * 120.00215 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.99880 * 180.02562 * 1 2 3 22 22 H 1.09002 * 113.66934 * 40.37217 * 3 2 1 23 23 H 1.09000 * 113.74933 * 269.32105 * 3 2 1 24 24 H 1.08991 * 109.47360 * 282.00860 * 5 4 3 25 25 H 1.08999 * 109.46908 * 42.00862 * 5 4 3 26 26 H 1.08997 * 109.47167 * 162.00187 * 5 4 3 27 27 H 1.09003 * 109.47378 * 275.54904 * 9 8 6 28 28 H 1.09004 * 109.47995 * 35.54981 * 9 8 6 29 29 H 1.09006 * 109.47228 * 155.55272 * 9 8 6 30 30 H 1.09003 * 109.47305 * 29.72658 * 10 8 6 31 31 H 1.09004 * 109.46789 * 149.72811 * 10 8 6 32 32 H 0.97000 * 120.00096 * 180.02562 * 14 13 11 33 33 H 1.09003 * 113.66668 * 90.69606 * 19 2 1 34 34 H 1.09000 * 113.67195 * 319.62069 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3035 0.0001 0.6529 5 6 3.2461 0.0017 2.1818 6 6 4.7129 0.0000 0.1195 7 8 5.1998 -1.0255 -0.3073 8 7 5.4325 1.1397 0.1166 9 6 4.8730 2.3606 0.7019 10 6 6.7716 1.1590 -0.4771 11 6 7.7936 0.8205 0.5774 12 1 7.4772 0.6122 1.5888 13 6 9.1326 0.7777 0.2512 14 7 9.5178 1.0318 -0.9803 15 14 10.3994 0.3587 1.5585 16 1 10.1194 -0.9940 2.1036 17 1 11.7567 0.3782 0.9566 18 1 10.3289 1.3583 2.6544 19 6 2.3963 -1.0571 0.0005 20 1 -0.5400 0.9352 -0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.1796 1.9074 0.6467 23 1 2.7192 1.3547 -0.9976 24 1 3.8453 0.8267 2.5671 25 1 2.2125 0.1208 2.5065 26 1 3.6396 -0.9413 2.5612 27 1 4.2499 2.8651 -0.0367 28 1 4.2687 2.1028 1.5717 29 1 5.6839 3.0224 1.0060 30 1 6.8229 0.4254 -1.2817 31 1 6.9774 2.1520 -0.8771 32 1 10.4597 1.0013 -1.2099 33 1 2.7184 -1.3540 -0.9977 34 1 2.1796 -1.9070 0.6476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601014041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:25 Heat of formation + Delta-G solvation = 6.479461 kcal Electronic energy + Delta-G solvation = -15603.308164 eV Core-core repulsion = 13116.642884 eV Total energy + Delta-G solvation = -2486.665279 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29763 -37.38295 -34.78804 -32.62309 -31.33147 -27.94078 -27.58635 -25.99815 -25.62547 -23.61712 -21.25360 -18.07821 -17.73876 -16.47357 -16.08669 -15.49582 -14.93861 -14.53924 -14.22283 -14.15530 -13.45437 -13.27372 -12.46822 -12.21093 -11.99870 -11.92710 -11.77281 -11.66740 -11.18703 -11.04263 -10.94707 -10.69503 -10.52367 -10.15620 -10.03725 -9.61662 -9.11288 -8.70475 -8.41248 -7.59591 -6.02030 -4.06619 2.22842 3.33148 3.37523 3.39270 3.47305 4.01580 4.40957 4.46445 4.62259 4.65546 5.10179 5.26641 5.33662 5.44666 5.64470 5.70070 5.77610 5.82094 5.89847 5.96629 6.00187 6.03867 6.21427 6.28239 6.38758 6.42054 6.95592 7.09150 7.45413 7.58342 7.94445 8.26116 8.46968 8.92778 9.14311 9.58358 11.06042 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050912 B = 0.006752 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.839501 B = 4146.092354 C = 4185.287423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C -0.093 4.093 4 C -0.102 4.102 5 C -0.124 4.124 6 C 0.520 3.480 7 O -0.540 6.540 8 N -0.599 5.599 9 C 0.079 3.921 10 C 0.245 3.755 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.080 4.080 20 H 0.103 0.897 21 H 0.103 0.897 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.403 2.081 3.914 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.141 4.141 3 C -0.130 4.130 4 C -0.105 4.105 5 C -0.181 4.181 6 C 0.306 3.694 7 O -0.418 6.418 8 N -0.330 5.330 9 C -0.065 4.065 10 C 0.126 3.874 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.118 4.118 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.098 0.902 23 H 0.113 0.887 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.930 1.575 3.560 15.429 hybrid contribution 0.828 -0.102 0.723 1.104 sum -14.102 1.472 4.284 14.811 Atomic orbital electron populations 1.22781 0.93350 1.01815 1.04001 1.22956 0.93827 0.98648 0.98662 1.22430 0.93184 0.95924 1.01467 1.21903 0.92768 0.98762 0.97085 1.21569 1.02014 1.03052 0.91458 1.20001 0.86175 0.83816 0.79444 1.90661 1.71662 1.31678 1.47756 1.48098 1.18447 1.08635 1.57851 1.21828 0.99144 0.88152 0.97370 1.19291 0.76028 0.97862 0.94261 1.21397 0.91235 1.47582 0.96128 0.92550 1.24936 0.98424 0.95196 0.95570 1.69923 1.16483 1.49304 1.17814 0.86558 0.80241 0.79074 0.81547 1.20193 1.21171 1.20267 1.22181 0.92131 0.95634 1.01807 0.87894 0.87884 0.90213 0.88652 0.91336 0.91826 0.91690 0.93841 0.92077 0.90860 0.94026 0.95040 0.92691 0.88290 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 14.71 29.01 0.43 -1.44 16 2 C -0.14 -1.73 6.59 -100.29 -0.66 -2.39 16 3 C -0.09 -1.20 4.99 -27.02 -0.13 -1.34 16 4 C -0.10 -1.59 0.70 -154.88 -0.11 -1.70 16 5 C -0.12 -1.68 8.77 37.16 0.33 -1.36 16 6 C 0.52 11.11 6.60 -10.98 -0.07 11.04 16 7 O -0.54 -14.08 16.08 5.55 0.09 -13.99 16 8 N -0.60 -12.95 2.86 -182.95 -0.52 -13.47 16 9 C 0.08 1.28 8.99 59.84 0.54 1.82 16 10 C 0.24 6.53 5.11 -5.19 -0.03 6.50 16 11 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.08 -1.16 6.87 -27.02 -0.19 -1.35 16 20 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 21 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 22 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 23 H 0.10 1.30 8.06 -51.93 -0.42 0.88 16 24 H 0.07 0.92 5.93 -51.93 -0.31 0.61 16 25 H 0.06 0.72 7.70 -51.93 -0.40 0.32 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.60 7.47 -51.93 -0.39 0.21 16 28 H 0.06 0.84 4.50 -51.93 -0.23 0.61 16 29 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 30 H 0.04 1.25 7.47 -51.93 -0.39 0.86 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.10 1.57 7.94 -51.93 -0.41 1.15 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -32.88 282.67 -5.80 -38.68 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -5.02 Total: -2.35 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.32 Total: -4.01 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.21 Total: -39.69 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.88 -5.80 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601014041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.158 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds