Wall clock time and date at job start Mon Mar 30 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51578 * 135.78278 * 2 1 4 4 C 1.53834 * 86.76010 * 154.84154 * 3 2 1 5 5 C 1.52998 * 113.66007 * 270.21747 * 4 3 2 6 6 C 1.50697 * 113.65998 * 139.26666 * 4 3 2 7 7 O 1.21285 * 120.00307 * 233.86684 * 6 4 3 8 8 N 1.34784 * 120.00140 * 53.86596 * 6 4 3 9 9 C 1.46493 * 119.99432 * 3.50316 * 8 6 4 10 10 C 1.46492 * 120.00050 * 183.77457 * 8 6 4 11 11 C 1.50706 * 109.47381 * 269.72645 * 10 8 6 12 12 H 1.08001 * 119.99301 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00257 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99831 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46848 * 59.99811 * 15 13 11 17 17 H 1.48491 * 109.46888 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46946 * 300.00157 * 15 13 11 19 19 C 1.51579 * 135.78154 * 179.97438 * 2 1 3 20 20 H 1.07994 * 120.00215 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.99880 * 180.02562 * 1 2 3 22 22 H 1.09002 * 113.66934 * 40.37217 * 3 2 1 23 23 H 1.09000 * 113.74933 * 269.32105 * 3 2 1 24 24 H 1.08991 * 109.47360 * 282.00860 * 5 4 3 25 25 H 1.08999 * 109.46908 * 42.00862 * 5 4 3 26 26 H 1.08997 * 109.47167 * 162.00187 * 5 4 3 27 27 H 1.09003 * 109.47378 * 275.54904 * 9 8 6 28 28 H 1.09004 * 109.47995 * 35.54981 * 9 8 6 29 29 H 1.09006 * 109.47228 * 155.55272 * 9 8 6 30 30 H 1.09003 * 109.47305 * 29.72658 * 10 8 6 31 31 H 1.09004 * 109.46789 * 149.72811 * 10 8 6 32 32 H 0.97000 * 120.00096 * 180.02562 * 14 13 11 33 33 H 1.09003 * 113.66668 * 90.69606 * 19 2 1 34 34 H 1.09000 * 113.67195 * 319.62069 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3035 0.0001 0.6529 5 6 3.2461 0.0017 2.1818 6 6 4.7129 0.0000 0.1195 7 8 5.1998 -1.0255 -0.3073 8 7 5.4325 1.1397 0.1166 9 6 4.8730 2.3606 0.7019 10 6 6.7716 1.1590 -0.4771 11 6 7.7936 0.8205 0.5774 12 1 7.4772 0.6122 1.5888 13 6 9.1326 0.7777 0.2512 14 7 9.5178 1.0318 -0.9803 15 14 10.3994 0.3587 1.5585 16 1 10.1194 -0.9940 2.1036 17 1 11.7567 0.3782 0.9566 18 1 10.3289 1.3583 2.6544 19 6 2.3963 -1.0571 0.0005 20 1 -0.5400 0.9352 -0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.1796 1.9074 0.6467 23 1 2.7192 1.3547 -0.9976 24 1 3.8453 0.8267 2.5671 25 1 2.2125 0.1208 2.5065 26 1 3.6396 -0.9413 2.5612 27 1 4.2499 2.8651 -0.0367 28 1 4.2687 2.1028 1.5717 29 1 5.6839 3.0224 1.0060 30 1 6.8229 0.4254 -1.2817 31 1 6.9774 2.1520 -0.8771 32 1 10.4597 1.0013 -1.2099 33 1 2.7184 -1.3540 -0.9977 34 1 2.1796 -1.9070 0.6476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601014041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:25 Heat of formation + Delta-G solvation = -14.861415 kcal Electronic energy + Delta-G solvation = -15604.233573 eV Core-core repulsion = 13116.642884 eV Total energy + Delta-G solvation = -2487.590689 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65549 -38.85639 -36.62441 -34.73560 -32.44075 -29.81394 -28.65386 -27.52324 -26.77266 -25.53542 -22.83638 -19.60080 -18.80389 -18.62036 -17.55341 -17.19982 -16.40861 -16.19917 -15.58542 -15.23146 -14.91170 -14.64033 -14.28072 -13.61821 -13.51350 -13.28381 -13.18833 -13.05434 -12.88266 -12.77790 -12.50627 -12.25855 -12.21325 -11.80559 -11.68566 -11.07472 -10.65806 -10.42423 -9.96867 -9.42017 -8.23605 -6.38879 1.35087 1.35928 1.39899 1.47234 1.81831 2.32178 2.46822 3.05499 3.35993 3.49713 3.61253 3.93905 4.02095 4.35023 4.51035 4.64551 4.71331 4.77810 4.80557 4.85503 4.88255 4.96216 5.03009 5.06897 5.19258 5.23727 5.31508 5.54910 5.61283 5.83817 6.04545 6.05964 6.67977 6.78647 7.26581 7.47430 8.83344 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050912 B = 0.006752 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.839501 B = 4146.092354 C = 4185.287423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C -0.082 4.082 4 C -0.101 4.101 5 C -0.119 4.119 6 C 0.509 3.491 7 O -0.603 6.603 8 N -0.605 5.605 9 C 0.074 3.926 10 C 0.258 3.742 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.969 3.031 16 H -0.279 1.279 17 H -0.277 1.277 18 H -0.258 1.258 19 C -0.087 4.087 20 H 0.127 0.873 21 H 0.116 0.884 22 H 0.110 0.890 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.066 0.934 30 H -0.007 1.007 31 H 0.025 0.975 32 H 0.268 0.732 33 H 0.071 0.929 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 3.241 5.877 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.119 4.119 4 C -0.105 4.105 5 C -0.176 4.176 6 C 0.298 3.702 7 O -0.484 6.484 8 N -0.335 5.335 9 C -0.068 4.068 10 C 0.136 3.864 11 C -0.582 4.582 12 H 0.070 0.930 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.793 3.207 16 H -0.205 1.205 17 H -0.202 1.202 18 H -0.183 1.183 19 C -0.125 4.125 20 H 0.145 0.855 21 H 0.134 0.866 22 H 0.128 0.872 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.012 0.988 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.069 2.780 5.543 18.161 hybrid contribution 1.396 -0.482 0.043 1.477 sum -15.673 2.298 5.586 16.797 Atomic orbital electron populations 1.23143 0.92391 1.03603 0.99608 1.22629 0.94032 0.96452 1.02491 1.22344 0.92192 0.96370 1.01020 1.21999 0.88616 1.01284 0.98559 1.21578 1.04134 1.02463 0.89389 1.21180 0.88288 0.82562 0.78218 1.90613 1.73543 1.33877 1.50415 1.48131 1.16827 1.10884 1.57659 1.22133 0.99526 0.85967 0.99158 1.18777 0.78909 0.95702 0.92981 1.21662 0.92270 1.48015 0.96238 0.92988 1.25884 1.00650 0.94735 0.97928 1.70045 1.17171 1.49870 1.19805 0.85451 0.77471 0.78821 0.78966 1.20468 1.20169 1.18272 1.22137 0.93414 0.96519 1.00415 0.85461 0.86569 0.87215 0.89957 0.91060 0.88388 0.93093 0.90843 0.89002 0.91475 0.98845 0.95701 0.92352 0.91034 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 14.71 67.78 1.00 -1.38 16 2 C -0.16 -3.35 6.59 -15.98 -0.11 -3.45 16 3 C -0.08 -1.91 4.99 30.41 0.15 -1.75 16 4 C -0.10 -3.08 0.70 -52.42 -0.04 -3.12 16 5 C -0.12 -2.94 8.77 71.98 0.63 -2.31 16 6 C 0.51 22.46 6.60 87.66 0.58 23.04 16 7 O -0.60 -33.49 16.08 -3.05 -0.05 -33.53 16 8 N -0.60 -26.75 2.86 -851.12 -2.43 -29.18 16 9 C 0.07 2.29 8.99 127.77 1.15 3.44 16 10 C 0.26 14.44 5.11 85.64 0.44 14.88 16 11 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 12 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 13 C 0.01 0.41 5.46 84.66 0.46 0.87 16 14 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 15 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 19 C -0.09 -2.50 6.87 30.41 0.21 -2.29 16 20 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 21 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 22 H 0.11 1.87 7.75 -2.39 -0.02 1.85 16 23 H 0.08 2.11 8.06 -2.39 -0.02 2.10 16 24 H 0.07 1.71 5.93 -2.39 -0.01 1.70 16 25 H 0.10 1.79 7.70 -2.39 -0.02 1.77 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.85 7.47 -2.39 -0.02 1.83 16 28 H 0.09 2.27 4.50 -2.39 -0.01 2.26 16 29 H 0.07 2.16 8.03 -2.38 -0.02 2.14 16 30 H -0.01 -0.43 7.47 -2.39 -0.02 -0.44 16 31 H 0.03 1.40 8.07 -2.38 -0.02 1.38 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.07 2.39 7.94 -2.39 -0.02 2.37 16 34 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -75.59 282.67 5.61 -69.97 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.07 Total: 6.20 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 4.71 Total: -4.13 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.15 Total: -86.26 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.53 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.59 5.61 -69.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601014041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.110 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds