Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51586 * 135.77970 * 2 1 4 4 C 1.53845 * 86.75392 * 154.84577 * 3 2 1 5 5 C 1.52992 * 113.65845 * 270.21975 * 4 3 2 6 6 C 1.50703 * 113.65585 * 139.26994 * 4 3 2 7 7 O 1.21279 * 119.99926 * 359.97438 * 6 4 3 8 8 N 1.34775 * 119.99773 * 180.02562 * 6 4 3 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.46866 * 90.00390 * 15 13 11 17 17 H 1.48502 * 109.47245 * 210.00175 * 15 13 11 18 18 H 1.48494 * 109.47271 * 330.00312 * 15 13 11 19 19 C 1.51582 * 135.78362 * 180.02562 * 2 1 3 20 20 H 1.07993 * 120.00330 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.99844 * 180.02562 * 1 2 3 22 22 H 1.08995 * 113.66455 * 40.37950 * 3 2 1 23 23 H 1.08998 * 113.75121 * 269.32167 * 3 2 1 24 24 H 1.09002 * 109.47196 * 298.33341 * 5 4 3 25 25 H 1.08996 * 109.47268 * 58.34005 * 5 4 3 26 26 H 1.09000 * 109.46889 * 178.33857 * 5 4 3 27 27 H 0.96992 * 120.00503 * 359.97438 * 8 6 4 28 28 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 29 29 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 30 30 H 1.09001 * 109.46801 * 300.00349 * 10 9 8 31 31 H 1.09001 * 109.46998 * 59.99945 * 10 9 8 32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.08993 * 113.66729 * 90.68881 * 19 2 1 34 34 H 1.08998 * 113.66173 * 319.61093 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2461 0.0015 2.1817 6 6 4.7130 0.0001 0.1194 7 8 5.0341 0.7878 -0.7451 8 7 5.6163 -0.8759 0.6023 9 6 6.9863 -0.8761 0.0832 10 6 7.8010 -1.9582 0.7948 11 6 9.2101 -1.9590 0.2604 12 1 9.4961 -1.2575 -0.5094 13 6 10.1345 -2.8545 0.7551 14 7 9.7863 -3.7083 1.6928 15 14 11.8813 -2.8549 0.0932 16 1 12.7163 -1.9287 0.8996 17 1 12.4421 -4.2274 0.1773 18 1 11.8741 -2.4090 -1.3232 19 6 2.3964 -1.0571 -0.0005 20 1 -0.5400 0.9352 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.1795 1.9073 0.6467 23 1 2.7192 1.3549 -0.9976 24 1 3.5890 0.9656 2.5573 25 1 2.2203 -0.1712 2.5070 26 1 3.8884 -0.7889 2.5701 27 1 5.3594 -1.5060 1.2934 28 1 7.4424 0.0977 0.2613 29 1 6.9691 -1.0790 -0.9876 30 1 7.8181 -1.7549 1.8655 31 1 7.3449 -2.9322 0.6171 32 1 10.4365 -4.3385 2.0405 33 1 2.7183 -1.3532 -0.9988 34 1 2.1796 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601430246.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = -14.446875 kcal Electronic energy + Delta-G solvation = -14868.673937 eV Core-core repulsion = 12381.101224 eV Total energy + Delta-G solvation = -2487.572713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43769 -37.72664 -34.84094 -32.89636 -31.62739 -29.51087 -27.74743 -26.00307 -25.07530 -22.83154 -20.90027 -19.30205 -17.81097 -16.73272 -16.38058 -15.37256 -15.24953 -14.62001 -14.50542 -14.36994 -13.79325 -13.46755 -13.00742 -12.45825 -12.30138 -12.16627 -11.86614 -11.43526 -11.20132 -11.04537 -10.96763 -10.63684 -10.33586 -10.28296 -9.75749 -9.42922 -9.26136 -9.06296 -8.53731 -8.34803 -6.09879 -4.12734 2.09696 2.97865 3.29148 3.35231 3.39338 3.73396 4.26216 4.40303 4.44742 4.47424 4.88890 5.16037 5.27194 5.27565 5.56087 5.59967 5.65431 5.72501 5.82867 5.86093 6.07013 6.14212 6.28639 6.34937 6.35919 6.73836 6.80565 6.93964 7.51325 7.61209 7.88374 8.04023 8.27617 8.67245 8.93315 9.52180 11.01737 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.064668 B = 0.004790 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.877253 B = 5844.208409 C = 6012.186297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C -0.082 4.082 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.521 3.479 7 O -0.551 6.551 8 N -0.719 5.719 9 C 0.120 3.880 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.089 4.089 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.076 0.924 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.397 0.603 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 4.919 0.468 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.119 4.119 4 C -0.110 4.110 5 C -0.184 4.184 6 C 0.306 3.694 7 O -0.429 6.429 8 N -0.368 5.368 9 C -0.002 4.002 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.126 4.126 20 H 0.123 0.877 21 H 0.122 0.878 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.231 0.769 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.797 5.328 -0.045 16.671 hybrid contribution 0.923 -0.449 0.101 1.031 sum -14.875 4.879 0.056 15.654 Atomic orbital electron populations 1.22820 0.93347 1.01997 1.03369 1.22857 0.93823 0.98313 0.99246 1.22242 0.92009 0.95439 1.02228 1.21973 0.92055 0.99801 0.97154 1.21571 1.02629 1.02901 0.91263 1.20195 0.86291 0.80713 0.82193 1.90651 1.80215 1.39926 1.32118 1.46337 1.12381 1.36566 1.41504 1.21732 0.78926 1.01142 0.98396 1.19323 0.94442 0.92765 0.95958 1.21058 0.94828 1.18348 1.21813 0.92263 1.24994 0.99070 0.95259 0.94942 1.69957 1.34959 1.20560 1.27848 0.86512 0.84295 0.77268 0.79488 1.20550 1.21156 1.19722 1.22294 0.92974 0.95827 1.01521 0.87734 0.87755 0.90546 0.87601 0.91647 0.91494 0.91530 0.76888 0.92595 0.92618 0.95955 0.95952 0.92848 0.88533 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 14.71 29.02 0.43 -1.19 16 2 C -0.14 -1.53 6.60 -100.28 -0.66 -2.19 16 3 C -0.08 -1.00 6.98 -27.01 -0.19 -1.19 16 4 C -0.11 -1.37 1.27 -154.86 -0.20 -1.57 16 5 C -0.13 -1.36 8.99 37.15 0.33 -1.03 16 6 C 0.52 8.98 6.93 -10.98 -0.08 8.91 16 7 O -0.55 -11.53 15.90 5.56 0.09 -11.45 16 8 N -0.72 -12.72 5.44 -60.29 -0.33 -13.05 16 9 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.09 -1.02 7.18 -27.00 -0.19 -1.21 16 20 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 21 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 22 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 23 H 0.11 1.45 7.42 -51.93 -0.39 1.07 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 26 H 0.07 0.69 7.04 -51.93 -0.37 0.33 16 27 H 0.40 6.15 7.37 -40.82 -0.30 5.85 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -31.02 290.11 -6.50 -37.51 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.21 Total: 1.64 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.13 Total: -10.02 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.41 Total: -38.45 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.02 -6.50 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601430246.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.068 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds