Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51586 * 135.77970 * 2 1 4 4 C 1.53845 * 86.75392 * 154.84577 * 3 2 1 5 5 C 1.52992 * 113.65845 * 270.21975 * 4 3 2 6 6 C 1.50703 * 113.65585 * 139.26994 * 4 3 2 7 7 O 1.21279 * 119.99926 * 359.97438 * 6 4 3 8 8 N 1.34775 * 119.99773 * 180.02562 * 6 4 3 9 9 C 1.46504 * 119.99531 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.46883 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.46866 * 90.00390 * 15 13 11 17 17 H 1.48502 * 109.47245 * 210.00175 * 15 13 11 18 18 H 1.48494 * 109.47271 * 330.00312 * 15 13 11 19 19 C 1.51582 * 135.78362 * 180.02562 * 2 1 3 20 20 H 1.07993 * 120.00330 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.99844 * 180.02562 * 1 2 3 22 22 H 1.08995 * 113.66455 * 40.37950 * 3 2 1 23 23 H 1.08998 * 113.75121 * 269.32167 * 3 2 1 24 24 H 1.09002 * 109.47196 * 298.33341 * 5 4 3 25 25 H 1.08996 * 109.47268 * 58.34005 * 5 4 3 26 26 H 1.09000 * 109.46889 * 178.33857 * 5 4 3 27 27 H 0.96992 * 120.00503 * 359.97438 * 8 6 4 28 28 H 1.09001 * 109.46891 * 60.00097 * 9 8 6 29 29 H 1.08993 * 109.47378 * 299.99469 * 9 8 6 30 30 H 1.09001 * 109.46801 * 300.00349 * 10 9 8 31 31 H 1.09001 * 109.46998 * 59.99945 * 10 9 8 32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.08993 * 113.66729 * 90.68881 * 19 2 1 34 34 H 1.08998 * 113.66173 * 319.61093 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2461 0.0015 2.1817 6 6 4.7130 0.0001 0.1194 7 8 5.0341 0.7878 -0.7451 8 7 5.6163 -0.8759 0.6023 9 6 6.9863 -0.8761 0.0832 10 6 7.8010 -1.9582 0.7948 11 6 9.2101 -1.9590 0.2604 12 1 9.4961 -1.2575 -0.5094 13 6 10.1345 -2.8545 0.7551 14 7 9.7863 -3.7083 1.6928 15 14 11.8813 -2.8549 0.0932 16 1 12.7163 -1.9287 0.8996 17 1 12.4421 -4.2274 0.1773 18 1 11.8741 -2.4090 -1.3232 19 6 2.3964 -1.0571 -0.0005 20 1 -0.5400 0.9352 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.1795 1.9073 0.6467 23 1 2.7192 1.3549 -0.9976 24 1 3.5890 0.9656 2.5573 25 1 2.2203 -0.1712 2.5070 26 1 3.8884 -0.7889 2.5701 27 1 5.3594 -1.5060 1.2934 28 1 7.4424 0.0977 0.2613 29 1 6.9691 -1.0790 -0.9876 30 1 7.8181 -1.7549 1.8655 31 1 7.3449 -2.9322 0.6171 32 1 10.4365 -4.3385 2.0405 33 1 2.7183 -1.3532 -0.9988 34 1 2.1796 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601430246.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = -33.968930 kcal Electronic energy + Delta-G solvation = -14869.520477 eV Core-core repulsion = 12381.101224 eV Total energy + Delta-G solvation = -2488.419253 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61352 -38.98143 -36.59059 -34.85660 -32.68701 -31.25830 -28.60424 -27.09704 -26.77728 -24.29980 -22.70914 -20.63322 -18.68843 -18.54410 -17.84124 -16.87792 -16.55684 -16.48724 -15.69471 -15.40089 -15.19580 -14.70677 -14.34529 -14.28115 -13.42117 -13.27469 -13.12923 -12.95745 -12.84387 -12.55479 -12.39100 -12.23506 -11.88051 -11.63810 -11.46125 -11.14398 -10.67118 -10.61461 -10.05003 -9.98158 -8.25167 -6.35864 1.32402 1.41320 1.41683 1.53272 1.60482 2.27486 2.46101 3.09526 3.35230 3.48524 3.58462 3.93582 3.99268 4.42320 4.46737 4.50990 4.66979 4.78452 4.79124 4.82529 4.89664 4.95552 5.01262 5.20488 5.26192 5.29337 5.48051 5.56129 5.58220 5.77206 6.01665 6.14924 6.61595 6.77074 7.25615 7.33596 8.86674 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.064668 B = 0.004790 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.877253 B = 5844.208409 C = 6012.186297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.104 4.104 5 C -0.123 4.123 6 C 0.518 3.482 7 O -0.591 6.591 8 N -0.714 5.714 9 C 0.139 3.861 10 C 0.024 3.976 11 C -0.549 4.549 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.086 4.086 20 H 0.119 0.881 21 H 0.122 0.878 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.410 0.590 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.332 4.825 0.861 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.180 4.180 6 C 0.306 3.694 7 O -0.473 6.473 8 N -0.364 5.364 9 C 0.015 3.985 10 C -0.014 4.014 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.123 4.123 20 H 0.137 0.863 21 H 0.140 0.860 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.246 0.754 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.006 5.228 0.365 17.795 hybrid contribution 1.205 -0.405 -0.033 1.272 sum -15.800 4.823 0.332 16.523 Atomic orbital electron populations 1.23146 0.92616 1.03537 0.99772 1.22643 0.94079 0.96704 1.02383 1.22187 0.92703 0.96194 1.01141 1.22069 0.88675 1.01324 0.98639 1.21590 1.04156 1.02993 0.89247 1.21059 0.87768 0.79313 0.81247 1.90626 1.81259 1.41410 1.33956 1.46177 1.11048 1.37294 1.41858 1.21237 0.80673 0.99237 0.97354 1.19127 0.93989 0.93013 0.95253 1.21467 0.96448 1.18656 1.22155 0.92430 1.25860 1.03386 0.94717 0.95076 1.70055 1.36522 1.21127 1.28814 0.85447 0.78993 0.77606 0.79014 1.19728 1.20399 1.19137 1.22254 0.92756 0.96337 1.00956 0.86278 0.86016 0.89447 0.89948 0.91787 0.89215 0.91291 0.75430 0.93688 0.93750 0.97243 0.97277 0.92490 0.90004 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 14.71 67.78 1.00 -1.24 16 2 C -0.16 -3.04 6.60 -15.98 -0.11 -3.14 16 3 C -0.08 -2.00 6.98 30.42 0.21 -1.79 16 4 C -0.10 -2.58 1.27 -52.41 -0.07 -2.64 16 5 C -0.12 -2.39 8.99 71.98 0.65 -1.75 16 6 C 0.52 18.04 6.93 87.66 0.61 18.65 16 7 O -0.59 -25.46 15.90 -3.03 -0.05 -25.51 16 8 N -0.71 -25.51 5.44 -463.05 -2.52 -28.03 16 9 C 0.14 6.13 5.61 86.38 0.48 6.61 16 10 C 0.02 1.20 5.09 29.85 0.15 1.36 16 11 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.01 0.48 5.46 84.65 0.46 0.94 16 14 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 15 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.09 -1.83 7.18 30.42 0.22 -1.61 16 20 H 0.12 1.41 8.06 -2.91 -0.02 1.39 16 21 H 0.12 1.39 8.06 -2.91 -0.02 1.37 16 22 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 23 H 0.08 2.31 7.42 -2.39 -0.02 2.29 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.37 7.70 -2.39 -0.02 1.36 16 26 H 0.07 1.31 7.04 -2.39 -0.02 1.29 16 27 H 0.41 12.60 7.37 -92.71 -0.68 11.91 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.08 1.96 8.09 -2.39 -0.02 1.95 16 34 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -66.59 290.11 3.97 -62.62 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.39 Total: 14.52 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 3.84 Total: -15.35 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.24 Total: -82.05 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -66.59 3.97 -62.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601430246.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.647 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds