Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86793 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47343 * 274.98757 * 3 2 1 5 5 H 1.48506 * 109.47142 * 34.98494 * 3 2 1 6 6 H 1.48497 * 109.47206 * 154.98249 * 3 2 1 7 7 C 1.40048 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00192 * 186.15247 * 7 2 1 9 9 C 1.46374 * 120.00336 * 6.14951 * 7 2 1 10 10 O 1.21691 * 119.99661 * 353.94081 * 9 7 2 11 11 N 1.34774 * 120.00718 * 173.94092 * 9 7 2 12 12 C 1.46494 * 120.00487 * 180.02562 * 11 9 7 13 13 H 1.08996 * 109.47664 * 325.00786 * 12 11 9 14 14 C 1.52948 * 109.47936 * 85.02008 * 12 11 9 15 15 C 1.52938 * 109.82120 * 182.98054 * 14 12 11 16 16 C 1.53179 * 109.45676 * 297.01589 * 15 14 12 17 17 C 1.53155 * 108.87870 * 56.56770 * 16 15 14 18 18 C 1.52812 * 117.74970 * 160.37547 * 17 16 15 19 19 C 1.52932 * 117.69741 * 91.51020 * 17 16 15 20 20 C 1.53147 * 115.00478 * 306.05769 * 17 16 15 21 21 H 0.97000 * 120.00050 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99321 * 359.97438 * 11 9 7 23 23 H 1.09000 * 109.41400 * 303.08661 * 14 12 11 24 24 H 1.08998 * 109.41374 * 62.94959 * 14 12 11 25 25 H 1.09006 * 109.47535 * 57.01501 * 15 14 12 26 26 H 1.09009 * 109.47202 * 177.01831 * 15 14 12 27 27 H 1.08991 * 109.56973 * 296.74807 * 16 15 14 28 28 H 1.08997 * 109.57078 * 176.37982 * 16 15 14 29 29 H 1.08998 * 117.50007 * 359.85164 * 18 17 16 30 30 H 1.09001 * 117.50247 * 144.85725 * 18 17 16 31 31 H 1.08994 * 117.51946 * 0.27627 * 19 17 16 32 32 H 1.08996 * 117.49636 * 215.19508 * 19 17 16 33 33 H 1.09003 * 109.57133 * 173.76875 * 20 17 16 34 34 H 1.09001 * 109.57575 * 294.00863 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5869 1.4120 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2815 -2.4768 -0.1369 10 8 0.0646 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2603 12 6 1.2349 -4.8990 -0.3973 13 1 0.3228 -4.8608 0.1981 14 6 0.8755 -5.1242 -1.8668 15 6 0.0529 -6.4057 -2.0090 16 6 0.8975 -7.6056 -1.5694 17 6 1.3798 -7.3730 -0.1345 18 6 1.8358 -8.5902 0.6690 19 6 0.5084 -7.9061 1.0036 20 6 2.1176 -6.0505 0.0941 21 1 -0.4850 0.8400 0.0004 22 1 2.9311 -3.6294 -0.2590 23 1 0.2935 -4.2778 -2.2312 24 1 1.7896 -5.2149 -2.4535 25 1 -0.8364 -6.3381 -1.3823 26 1 -0.2449 -6.5327 -3.0499 27 1 1.7572 -7.7090 -2.2312 28 1 0.2929 -8.5117 -1.6088 29 1 1.7913 -9.5625 0.1784 30 1 2.6627 -8.4525 1.3657 31 1 -0.4092 -8.4284 0.7331 32 1 0.4623 -7.3179 1.9201 33 1 2.3222 -5.9256 1.1574 34 1 3.0562 -6.0555 -0.4601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606265436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = -39.270712 kcal Electronic energy + Delta-G solvation = -15441.530312 eV Core-core repulsion = 12952.881157 eV Total energy + Delta-G solvation = -2488.649155 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31382 -37.07572 -34.54586 -32.63199 -32.06471 -29.09967 -27.14843 -25.95733 -22.40870 -22.19222 -21.00302 -19.27920 -18.50072 -17.03835 -15.37551 -15.26440 -15.04637 -14.18173 -14.02599 -13.80035 -13.24690 -12.86434 -12.40774 -12.25240 -12.08446 -11.46970 -11.38750 -11.14741 -11.00068 -10.80665 -10.71159 -10.46855 -10.39460 -10.20835 -10.03581 -9.77209 -9.31068 -8.81244 -7.54661 -7.41645 -6.15324 -4.59480 3.15863 3.22976 3.26502 3.85985 4.13678 4.60893 4.66633 4.87621 4.91832 5.03434 5.32396 5.45335 5.50598 5.66066 5.69389 5.74477 5.78277 5.96375 5.98764 6.01236 6.10040 6.19416 6.24340 6.26160 6.43975 6.51585 6.64934 6.87844 6.97737 7.47319 7.99948 8.19451 8.39289 9.06651 9.61110 10.64626 10.84277 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054099 B = 0.006200 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.448205 B = 4514.872219 C = 4656.686427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.161 3.839 13 H 0.074 0.926 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.180 4.180 19 C -0.174 4.174 20 C -0.086 4.086 21 H 0.267 0.733 22 H 0.378 0.622 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -12.898 -1.350 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.418 5.418 12 C 0.055 3.945 13 H 0.092 0.908 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.217 4.217 19 C -0.211 4.211 20 C -0.124 4.124 21 H 0.078 0.922 22 H 0.209 0.791 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.979 -12.774 -1.333 13.184 hybrid contribution 0.946 0.782 0.003 1.227 sum 3.925 -11.992 -1.330 12.688 Atomic orbital electron populations 1.70032 1.07053 1.27140 1.35529 1.25694 0.94569 1.00230 0.92637 0.86388 0.80248 0.81638 0.78633 1.19848 1.20498 1.18934 1.20908 0.94065 0.89737 1.53775 0.91512 1.18198 0.87166 0.82455 0.76219 1.90591 1.14065 1.86385 1.55273 1.46202 1.08398 1.05805 1.81385 1.20415 0.95659 0.83710 0.94760 0.90771 1.21904 0.99472 0.97087 0.98073 1.21482 0.98705 0.94530 1.00442 1.21146 0.99160 0.97877 0.93428 1.21442 1.02588 0.94353 0.93022 1.22974 0.98411 0.96540 1.03747 1.23022 0.94382 1.03809 0.99909 1.21410 0.97979 0.91972 1.01025 0.92203 0.79089 0.91323 0.92873 0.91898 0.92415 0.91781 0.92349 0.89203 0.89080 0.89080 0.88824 0.91797 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.85 55.55 0.66 -22.68 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.37 29.56 -169.99 -5.03 15.34 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.68 9.53 -35.63 -0.34 -16.02 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.97 7.71 -12.99 -0.10 15.87 16 10 O -0.58 -18.91 14.71 5.20 0.08 -18.84 16 11 N -0.76 -17.33 5.07 -55.15 -0.28 -17.61 16 12 C 0.16 3.14 2.46 -67.86 -0.17 2.98 16 13 H 0.07 1.68 7.58 -51.93 -0.39 1.29 16 14 C -0.13 -2.29 5.39 -26.79 -0.14 -2.44 16 15 C -0.11 -1.67 5.93 -26.67 -0.16 -1.83 16 16 C -0.08 -0.99 5.67 -26.56 -0.15 -1.14 16 17 C -0.11 -1.50 1.98 -154.48 -0.31 -1.81 16 18 C -0.18 -2.01 9.99 -26.81 -0.27 -2.28 16 19 C -0.17 -2.17 9.93 -26.75 -0.27 -2.44 16 20 C -0.09 -1.31 5.14 -26.56 -0.14 -1.45 16 21 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 22 H 0.38 7.58 8.58 -40.82 -0.35 7.23 16 23 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -33.20 281.66 -7.81 -41.01 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.36 Total: 6.67 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.13 Total: -8.15 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.38 Total: -40.29 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.84 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.20 -7.81 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606265436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.740 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds