Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86793 * 120.00066 * 2 1 4 4 H 1.48496 * 109.47343 * 274.98757 * 3 2 1 5 5 H 1.48506 * 109.47142 * 34.98494 * 3 2 1 6 6 H 1.48497 * 109.47206 * 154.98249 * 3 2 1 7 7 C 1.40048 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00192 * 186.15247 * 7 2 1 9 9 C 1.46374 * 120.00336 * 6.14951 * 7 2 1 10 10 O 1.21691 * 119.99661 * 353.94081 * 9 7 2 11 11 N 1.34774 * 120.00718 * 173.94092 * 9 7 2 12 12 C 1.46494 * 120.00487 * 180.02562 * 11 9 7 13 13 H 1.08996 * 109.47664 * 325.00786 * 12 11 9 14 14 C 1.52948 * 109.47936 * 85.02008 * 12 11 9 15 15 C 1.52938 * 109.82120 * 182.98054 * 14 12 11 16 16 C 1.53179 * 109.45676 * 297.01589 * 15 14 12 17 17 C 1.53155 * 108.87870 * 56.56770 * 16 15 14 18 18 C 1.52812 * 117.74970 * 160.37547 * 17 16 15 19 19 C 1.52932 * 117.69741 * 91.51020 * 17 16 15 20 20 C 1.53147 * 115.00478 * 306.05769 * 17 16 15 21 21 H 0.97000 * 120.00050 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99321 * 359.97438 * 11 9 7 23 23 H 1.09000 * 109.41400 * 303.08661 * 14 12 11 24 24 H 1.08998 * 109.41374 * 62.94959 * 14 12 11 25 25 H 1.09006 * 109.47535 * 57.01501 * 15 14 12 26 26 H 1.09009 * 109.47202 * 177.01831 * 15 14 12 27 27 H 1.08991 * 109.56973 * 296.74807 * 16 15 14 28 28 H 1.08997 * 109.57078 * 176.37982 * 16 15 14 29 29 H 1.08998 * 117.50007 * 359.85164 * 18 17 16 30 30 H 1.09001 * 117.50247 * 144.85725 * 18 17 16 31 31 H 1.08994 * 117.51946 * 0.27627 * 19 17 16 32 32 H 1.08996 * 117.49636 * 215.19508 * 19 17 16 33 33 H 1.09003 * 109.57133 * 173.76875 * 20 17 16 34 34 H 1.09001 * 109.57575 * 294.00863 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5869 1.4120 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0823 -1.2156 0.0997 9 6 1.2815 -2.4768 -0.1369 10 8 0.0646 -2.4827 -0.1389 11 7 1.9610 -3.6341 -0.2603 12 6 1.2349 -4.8990 -0.3973 13 1 0.3228 -4.8608 0.1981 14 6 0.8755 -5.1242 -1.8668 15 6 0.0529 -6.4057 -2.0090 16 6 0.8975 -7.6056 -1.5694 17 6 1.3798 -7.3730 -0.1345 18 6 1.8358 -8.5902 0.6690 19 6 0.5084 -7.9061 1.0036 20 6 2.1176 -6.0505 0.0941 21 1 -0.4850 0.8400 0.0004 22 1 2.9311 -3.6294 -0.2590 23 1 0.2935 -4.2778 -2.2312 24 1 1.7896 -5.2149 -2.4535 25 1 -0.8364 -6.3381 -1.3823 26 1 -0.2449 -6.5327 -3.0499 27 1 1.7572 -7.7090 -2.2312 28 1 0.2929 -8.5117 -1.6088 29 1 1.7913 -9.5625 0.1784 30 1 2.6627 -8.4525 1.3657 31 1 -0.4092 -8.4284 0.7331 32 1 0.4623 -7.3179 1.9201 33 1 2.3222 -5.9256 1.1574 34 1 3.0562 -6.0555 -0.4601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606265436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = -61.642568 kcal Electronic energy + Delta-G solvation = -15442.500429 eV Core-core repulsion = 12952.881157 eV Total energy + Delta-G solvation = -2489.619272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62700 -38.98146 -36.10624 -34.62482 -33.86430 -30.72117 -28.47414 -27.94259 -23.64048 -23.37149 -22.51195 -21.15726 -19.86251 -18.90547 -17.44474 -16.72902 -16.22491 -15.88748 -15.61368 -15.22152 -14.71181 -14.40898 -14.14169 -13.86399 -13.47613 -13.05942 -12.84449 -12.73224 -12.56834 -12.36547 -12.09648 -12.02552 -11.99416 -11.75468 -11.42777 -10.93762 -10.84582 -10.43370 -9.81711 -9.40900 -8.29518 -6.85230 1.39203 1.40753 1.56625 2.24406 2.47939 2.84748 3.13710 3.59121 3.80321 3.82738 3.94806 4.12703 4.22693 4.24132 4.42230 4.47049 4.58287 4.70356 4.83150 4.94721 4.99844 5.06576 5.07383 5.16421 5.25997 5.31892 5.32091 5.38726 5.44520 5.49643 5.89931 6.26200 6.34645 6.86875 7.58788 8.51335 8.68619 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054099 B = 0.006200 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.448205 B = 4514.872219 C = 4656.686427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.753 5.753 12 C 0.159 3.841 13 H 0.031 0.969 14 C -0.120 4.120 15 C -0.109 4.109 16 C -0.070 4.070 17 C -0.132 4.132 18 C -0.151 4.151 19 C -0.187 4.187 20 C -0.074 4.074 21 H 0.274 0.726 22 H 0.393 0.607 23 H 0.019 0.981 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 -14.087 -1.751 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.614 4.614 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.519 6.519 11 N -0.406 5.406 12 C 0.054 3.946 13 H 0.050 0.950 14 C -0.159 4.159 15 C -0.147 4.147 16 C -0.107 4.107 17 C -0.133 4.133 18 C -0.187 4.187 19 C -0.224 4.224 20 C -0.112 4.112 21 H 0.084 0.916 22 H 0.226 0.774 23 H 0.038 0.962 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.274 -14.020 -1.735 15.079 hybrid contribution 0.219 1.104 0.147 1.135 sum 5.494 -12.916 -1.588 14.125 Atomic orbital electron populations 1.70204 1.09614 1.28883 1.36633 1.26995 0.95496 1.05019 0.91170 0.84992 0.78917 0.75090 0.79171 1.18777 1.19735 1.17092 1.21460 0.95190 0.90448 1.54257 0.89526 1.18599 0.86804 0.84355 0.75974 1.90544 1.16256 1.87524 1.57615 1.45918 1.09111 1.05696 1.79903 1.20559 0.94806 0.83915 0.95369 0.95028 1.21806 1.00018 0.97267 0.96834 1.21451 0.97981 0.93861 1.01414 1.21119 0.99503 0.97171 0.92939 1.21439 1.03710 0.94220 0.93909 1.23049 0.97268 0.96208 1.02210 1.23082 0.95856 1.04361 0.99128 1.21278 0.97907 0.91236 1.00760 0.91628 0.77358 0.96216 0.91141 0.93570 0.90616 0.90214 0.89980 0.86848 0.88394 0.88096 0.90285 0.92186 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.76 11.85 21.84 0.26 -51.50 16 2 C 0.03 1.60 5.49 85.30 0.47 2.07 16 3 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.58 -33.61 9.53 24.83 0.24 -33.37 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 32.32 7.71 86.36 0.67 32.98 16 10 O -0.63 -43.79 14.71 -4.32 -0.06 -43.85 16 11 N -0.75 -35.17 5.07 -446.63 -2.27 -37.44 16 12 C 0.16 6.42 2.46 45.04 0.11 6.53 16 13 H 0.03 1.54 7.58 -2.39 -0.02 1.52 16 14 C -0.12 -4.47 5.39 30.56 0.16 -4.31 16 15 C -0.11 -3.14 5.93 30.63 0.18 -2.96 16 16 C -0.07 -1.55 5.67 30.71 0.17 -1.38 16 17 C -0.13 -3.20 1.98 -52.17 -0.10 -3.31 16 18 C -0.15 -2.83 9.99 30.54 0.31 -2.52 16 19 C -0.19 -4.38 9.93 30.58 0.30 -4.07 16 20 C -0.07 -2.18 5.14 30.71 0.16 -2.02 16 21 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 22 H 0.39 15.77 8.58 -92.70 -0.80 14.97 16 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -76.44 281.66 2.91 -73.54 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.28 Total: 27.79 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 2.67 Total: -12.36 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.01 Total: -88.94 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.06 Total: -43.85 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -76.44 2.91 -73.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606265436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.895 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds