Wall clock time and date at job start Mon Mar 30 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.37011 * 137.26303 * 90.00733 * 12 11 10 14 14 O 1.21273 * 136.98676 * 43.70373 * 13 12 11 15 15 C 1.45221 * 86.02994 * 223.69011 * 13 12 11 16 16 H 1.08999 * 111.98047 * 71.81721 * 15 13 12 17 17 C 1.50809 * 133.20116 * 229.65899 * 15 13 12 18 18 C 1.56447 * 104.42469 * 118.55251 * 17 15 13 19 19 C 1.56241 * 104.69983 * 351.65013 * 18 17 15 20 20 C 1.40159 * 137.26142 * 269.62235 * 12 11 10 21 21 H 1.08995 * 111.05682 * 250.63286 * 20 12 11 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 28 28 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 29 29 H 1.09010 * 110.43856 * 237.79095 * 17 15 13 30 30 H 1.09002 * 110.44466 * 0.31286 * 17 15 13 31 31 H 1.09007 * 110.49329 * 232.79344 * 18 17 15 32 32 H 1.08999 * 110.39096 * 110.45824 * 18 17 15 33 33 H 1.09001 * 111.00193 * 216.21331 * 19 18 17 34 34 H 1.09002 * 110.99933 * 92.37265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 7 6.0399 -4.0176 -0.0219 13 6 6.3719 -4.9640 -0.9554 14 8 6.9888 -5.0022 -1.9988 15 6 5.6439 -5.9004 -0.1175 16 1 4.5672 -5.7367 -0.1630 17 6 5.9781 -7.2600 0.4428 18 6 5.9281 -7.0653 1.9943 19 6 5.7741 -5.5236 2.1956 20 6 6.3926 -4.9885 0.9255 21 1 7.4696 -5.1556 0.9327 22 1 -0.4850 0.8400 -0.0004 23 1 3.8713 -0.6783 -0.8962 24 1 3.8786 -0.6819 0.8837 25 1 3.6619 -3.1521 0.8797 26 1 3.6545 -3.1485 -0.9003 27 1 5.9116 -2.1207 -0.9068 28 1 5.9183 -2.1245 0.8731 29 1 5.2419 -7.9963 0.1199 30 1 6.9797 -7.5623 0.1367 31 1 6.8520 -7.4178 2.4531 32 1 5.0712 -7.5909 2.4156 33 1 6.3279 -5.1867 3.0719 34 1 4.7235 -5.2421 2.2675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687716395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:48 Heat of formation + Delta-G solvation = 50.312247 kcal Electronic energy + Delta-G solvation = -15160.530595 eV Core-core repulsion = 12675.766048 eV Total energy + Delta-G solvation = -2484.764547 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.70623 -37.33769 -35.50778 -33.91907 -32.03043 -29.32920 -28.37652 -25.55348 -23.43471 -22.40181 -20.28768 -19.91579 -19.35228 -16.82083 -16.56802 -15.89773 -15.64552 -15.01540 -14.60882 -14.20387 -14.15115 -13.36528 -12.88840 -12.49989 -12.31040 -12.23075 -11.70687 -11.58060 -11.37948 -11.13017 -10.90768 -10.73503 -10.48380 -9.98904 -9.82010 -9.66528 -9.61363 -9.24568 -8.56648 -8.14087 -6.07000 -4.05526 2.24620 2.59492 3.29045 3.36467 3.39055 3.73631 4.32161 4.42597 4.59889 4.70957 4.92132 5.07356 5.26057 5.27361 5.31378 5.38456 5.43204 5.69434 5.73004 5.79918 5.85599 5.94354 5.97654 6.09252 6.25845 6.42799 6.69199 6.80581 7.05325 7.23703 7.36582 7.75215 8.14617 8.50861 8.97469 9.55106 11.06428 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039719 B = 0.005902 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.776779 B = 4742.800432 C = 4996.691077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.114 4.114 11 C 0.142 3.858 12 N -0.651 5.651 13 C 0.563 3.437 14 O -0.483 6.483 15 C -0.166 4.166 16 H 0.132 0.868 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.103 4.103 20 C 0.086 3.914 21 H 0.073 0.927 22 H 0.263 0.737 23 H 0.012 0.988 24 H 0.017 0.983 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -12.226 4.883 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.153 4.153 11 C 0.023 3.977 12 N -0.391 5.391 13 C 0.354 3.646 14 O -0.355 6.355 15 C -0.188 4.188 16 H 0.150 0.850 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.141 4.141 20 C -0.020 4.020 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.937 -11.867 4.279 18.069 hybrid contribution 0.360 1.218 0.120 1.276 sum 13.297 -10.649 4.400 17.594 Atomic orbital electron populations 1.69915 1.06307 1.26927 1.51070 1.25036 0.94743 0.99192 0.94527 0.86771 0.80309 0.83594 0.78556 1.20257 1.21356 1.19036 1.21098 0.89338 0.94488 1.50917 0.91048 1.19534 0.97376 0.91771 0.96348 1.21840 0.91663 1.00125 1.01639 1.21576 0.95793 0.78218 1.02081 1.49536 1.69093 1.13718 1.06769 1.20015 0.77895 0.85893 0.80772 1.90722 1.39558 1.83801 1.21394 1.24090 1.02168 0.95075 0.97479 0.85038 1.21727 1.02482 0.95679 0.94799 1.23111 1.02462 0.94712 0.95094 1.21978 1.02169 0.94725 0.95277 1.21710 0.97626 0.87826 0.94806 0.90987 0.92703 0.96944 0.96492 0.92366 0.92583 0.91023 0.91134 0.90640 0.91205 0.91032 0.90587 0.90810 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.62 27.46 -169.99 -4.67 16.95 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.22 6.55 56.52 0.37 -5.85 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 10 C -0.11 -2.20 5.48 -26.73 -0.15 -2.34 16 11 C 0.14 2.31 6.99 -4.04 -0.03 2.28 16 12 N -0.65 -9.70 3.08 -331.91 -1.02 -10.72 16 13 C 0.56 8.76 8.82 -45.25 -0.40 8.36 16 14 O -0.48 -9.04 18.03 5.56 0.10 -8.94 16 15 C -0.17 -2.00 4.49 -98.98 -0.44 -2.44 16 16 H 0.13 1.65 8.13 -51.93 -0.42 1.22 16 17 C -0.11 -0.95 6.67 -25.98 -0.17 -1.13 16 18 C -0.12 -0.87 7.03 -23.14 -0.16 -1.03 16 19 C -0.10 -0.96 6.68 -25.97 -0.17 -1.14 16 20 C 0.09 1.02 4.89 -102.52 -0.50 0.52 16 21 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.01 0.29 7.56 -51.93 -0.39 -0.11 16 24 H 0.02 0.39 7.21 -51.93 -0.37 0.01 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -31.91 281.98 -8.55 -40.46 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.41 Total: -4.35 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.57 Total: -10.58 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.25 Total: -37.79 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.10 Total: -8.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.91 -8.55 -40.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.771 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds