Wall clock time and date at job start Mon Mar 30 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.37011 * 137.26303 * 90.00733 * 12 11 10 14 14 O 1.21273 * 136.98676 * 43.70373 * 13 12 11 15 15 C 1.45221 * 86.02994 * 223.69011 * 13 12 11 16 16 H 1.08999 * 111.98047 * 71.81721 * 15 13 12 17 17 C 1.50809 * 133.20116 * 229.65899 * 15 13 12 18 18 C 1.56447 * 104.42469 * 118.55251 * 17 15 13 19 19 C 1.56241 * 104.69983 * 351.65013 * 18 17 15 20 20 C 1.40159 * 137.26142 * 269.62235 * 12 11 10 21 21 H 1.08995 * 111.05682 * 250.63286 * 20 12 11 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 28 28 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 29 29 H 1.09010 * 110.43856 * 237.79095 * 17 15 13 30 30 H 1.09002 * 110.44466 * 0.31286 * 17 15 13 31 31 H 1.09007 * 110.49329 * 232.79344 * 18 17 15 32 32 H 1.08999 * 110.39096 * 110.45824 * 18 17 15 33 33 H 1.09001 * 111.00193 * 216.21331 * 19 18 17 34 34 H 1.09002 * 110.99933 * 92.37265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 7 6.0399 -4.0176 -0.0219 13 6 6.3719 -4.9640 -0.9554 14 8 6.9888 -5.0022 -1.9988 15 6 5.6439 -5.9004 -0.1175 16 1 4.5672 -5.7367 -0.1630 17 6 5.9781 -7.2600 0.4428 18 6 5.9281 -7.0653 1.9943 19 6 5.7741 -5.5236 2.1956 20 6 6.3926 -4.9885 0.9255 21 1 7.4696 -5.1556 0.9327 22 1 -0.4850 0.8400 -0.0004 23 1 3.8713 -0.6783 -0.8962 24 1 3.8786 -0.6819 0.8837 25 1 3.6619 -3.1521 0.8797 26 1 3.6545 -3.1485 -0.9003 27 1 5.9116 -2.1207 -0.9068 28 1 5.9183 -2.1245 0.8731 29 1 5.2419 -7.9963 0.1199 30 1 6.9797 -7.5623 0.1367 31 1 6.8520 -7.4178 2.4531 32 1 5.0712 -7.5909 2.4156 33 1 6.3279 -5.1867 3.0719 34 1 4.7235 -5.2421 2.2675 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687716395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:48 Heat of formation + Delta-G solvation = 29.586994 kcal Electronic energy + Delta-G solvation = -15161.429309 eV Core-core repulsion = 12675.766048 eV Total energy + Delta-G solvation = -2485.663261 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.75678 -38.55285 -36.83615 -35.42930 -33.92476 -30.66113 -29.50085 -26.94035 -24.70454 -23.59981 -21.95884 -21.00456 -20.35968 -18.91410 -17.75185 -17.09034 -16.63310 -16.21859 -16.06344 -15.68934 -15.46008 -14.83011 -14.33422 -14.07179 -13.65229 -13.30956 -13.12204 -12.91253 -12.61672 -12.33739 -12.07242 -12.00894 -11.80964 -11.59520 -11.39344 -11.36389 -10.99182 -10.77428 -10.73573 -9.32175 -8.30159 -6.34872 1.02813 1.36865 1.37839 1.49820 1.53489 2.35812 2.71149 3.05383 3.32065 3.84166 3.90026 3.95414 4.21668 4.27264 4.35916 4.46075 4.52018 4.56067 4.66930 4.68647 4.85139 5.02028 5.02398 5.10117 5.17144 5.24767 5.38724 5.46165 5.48966 5.59781 5.64585 5.90418 6.26987 6.72956 6.95030 7.29847 8.86697 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039719 B = 0.005902 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.776779 B = 4742.800432 C = 4996.691077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.149 3.851 12 N -0.659 5.659 13 C 0.551 3.449 14 O -0.524 6.524 15 C -0.160 4.160 16 H 0.125 0.875 17 C -0.105 4.105 18 C -0.105 4.105 19 C -0.100 4.100 20 C 0.085 3.915 21 H 0.082 0.918 22 H 0.266 0.734 23 H 0.018 0.982 24 H 0.029 0.971 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 -12.363 6.273 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.140 4.140 11 C 0.030 3.970 12 N -0.399 5.399 13 C 0.345 3.655 14 O -0.399 6.399 15 C -0.182 4.182 16 H 0.142 0.858 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.139 4.139 20 C -0.020 4.020 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.918 -12.034 5.696 19.995 hybrid contribution -0.318 1.183 -0.323 1.267 sum 14.600 -10.850 5.373 18.967 Atomic orbital electron populations 1.70074 1.08387 1.28209 1.52650 1.26050 0.95634 1.03648 0.94055 0.85633 0.79696 0.78039 0.79132 1.19494 1.20949 1.16423 1.21472 0.92145 0.93057 1.50473 0.95187 1.19479 0.93930 0.94504 0.96912 1.21626 0.94098 0.97442 1.00797 1.21324 0.93318 0.79492 1.02909 1.49671 1.68627 1.13549 1.08033 1.20677 0.77377 0.87198 0.80270 1.90687 1.41440 1.84654 1.23114 1.23928 1.01060 0.97261 0.95936 0.85767 1.21802 1.03153 0.93764 0.95665 1.23104 1.04184 0.93186 0.93805 1.22055 1.01399 0.95890 0.94533 1.22019 0.98346 0.85881 0.95735 0.90003 0.92487 0.96404 0.95239 0.92415 0.94318 0.91300 0.89228 0.89523 0.90621 0.88968 0.89300 0.89122 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 43.93 27.46 68.60 1.88 45.82 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -10.09 6.55 99.48 0.65 -9.44 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.10 -3.85 5.48 30.59 0.17 -3.68 16 11 C 0.15 4.63 6.99 86.38 0.60 5.24 16 12 N -0.66 -18.92 3.08 ******* -4.07 -22.99 16 13 C 0.55 16.95 8.82 64.44 0.57 17.51 16 14 O -0.52 -19.84 18.03 -3.01 -0.05 -19.89 16 15 C -0.16 -3.65 4.49 -10.18 -0.05 -3.70 16 16 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 17 C -0.11 -1.59 6.67 31.08 0.21 -1.38 16 18 C -0.10 -1.19 7.03 32.92 0.23 -0.96 16 19 C -0.10 -1.59 6.68 31.09 0.21 -1.38 16 20 C 0.08 1.83 4.89 25.84 0.13 1.96 16 21 H 0.08 1.65 7.85 -2.39 -0.02 1.63 16 22 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 23 H 0.02 0.79 7.56 -2.39 -0.02 0.78 16 24 H 0.03 1.28 7.21 -2.38 -0.02 1.26 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -70.45 281.98 1.96 -68.49 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.00 Total: 4.98 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 2.90 Total: -16.67 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.77 Total: -82.73 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -70.45 1.96 -68.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.080 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds