Wall clock time and date at job start Mon Mar 30 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48503 * 109.47087 * 240.00479 * 3 2 1 5 5 H 1.48494 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00623 * 3 2 1 7 7 C 1.37875 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47445 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.35806 * 132.29571 * 269.95474 * 12 11 10 14 14 O 1.21277 * 134.10528 * 0.02590 * 13 12 11 15 15 C 1.51493 * 91.79201 * 180.02562 * 13 12 11 16 16 H 1.08996 * 116.36246 * 117.57205 * 15 13 12 17 17 C 1.54215 * 113.16351 * 253.60318 * 15 13 12 18 18 C 1.54858 * 104.27365 * 116.87251 * 17 15 13 19 19 C 1.54867 * 102.74277 * 321.93084 * 18 17 15 20 20 C 1.47350 * 132.30457 * 89.99884 * 12 11 10 21 21 H 1.08993 * 116.40680 * 62.44347 * 20 12 11 22 22 H 0.97000 * 120.00081 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47148 * 60.00576 * 9 7 2 24 24 H 1.08997 * 109.47089 * 300.00292 * 9 7 2 25 25 H 1.08998 * 109.47166 * 59.99936 * 10 9 7 26 26 H 1.08997 * 109.47279 * 300.00165 * 10 9 7 27 27 H 1.08998 * 109.47084 * 59.99772 * 11 10 9 28 28 H 1.09003 * 109.47341 * 300.00157 * 11 10 9 29 29 H 1.09003 * 110.46986 * 358.17857 * 17 15 13 30 30 H 1.09000 * 110.47031 * 235.57479 * 17 15 13 31 31 H 1.08997 * 110.76102 * 203.61468 * 18 17 15 32 32 H 1.09003 * 110.75374 * 80.24341 * 18 17 15 33 33 H 1.08997 * 110.47153 * 156.79526 * 19 18 17 34 34 H 1.08998 * 110.46980 * 279.27325 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 3.0261 -6.7958 -1.0047 14 8 2.9771 -6.7382 -2.2151 15 6 3.7740 -7.6713 -0.0203 16 1 3.5456 -8.7367 -0.0495 17 6 5.2766 -7.3362 0.0698 18 6 5.4752 -6.8628 1.5308 19 6 4.1824 -6.0563 1.8074 20 6 3.0758 -6.8546 1.0896 21 1 2.4125 -7.4111 1.7516 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8905 27 1 0.8538 -5.0446 -0.8914 28 1 0.8532 -5.0451 0.8886 29 1 5.5316 -6.5381 -0.6275 30 1 5.8777 -8.2235 -0.1285 31 1 6.3543 -6.2238 1.6138 32 1 5.5508 -7.7151 2.2061 33 1 3.9846 -6.0085 2.8782 34 1 4.2627 -5.0525 1.3902 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687716396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:51 Heat of formation + Delta-G solvation = -28.914314 kcal Electronic energy + Delta-G solvation = -15191.012829 eV Core-core repulsion = 12702.812761 eV Total energy + Delta-G solvation = -2488.200068 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16042 -36.99025 -35.12963 -33.51266 -31.83005 -29.21056 -28.03818 -25.58354 -23.44501 -21.86239 -20.85182 -20.21058 -17.83459 -17.03729 -16.70334 -16.10550 -15.59939 -14.48923 -14.42001 -14.17297 -13.66140 -13.45888 -12.61002 -12.42578 -12.01911 -11.74674 -11.49517 -11.34524 -11.15386 -11.12732 -11.00069 -10.81173 -10.71985 -10.53926 -9.80606 -9.61626 -9.35783 -9.18512 -8.35702 -8.35417 -6.00547 -4.03060 2.67311 3.10991 3.33238 3.37472 3.40303 3.95234 4.33657 4.46132 4.48373 4.97470 5.01465 5.16345 5.20461 5.35111 5.42111 5.48849 5.53731 5.74147 5.85706 5.86826 5.92214 6.07282 6.12892 6.19274 6.50481 6.58459 6.98099 6.99805 7.08544 7.64281 7.78525 7.98271 8.39646 8.47494 9.03131 9.60946 11.10766 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.005922 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.564616 B = 4726.770435 C = 5001.429635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.123 4.123 11 C 0.121 3.879 12 N -0.622 5.622 13 C 0.529 3.471 14 O -0.511 6.511 15 C -0.154 4.154 16 H 0.121 0.879 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.137 4.137 20 C 0.127 3.873 21 H 0.108 0.892 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.139 -15.688 5.359 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.162 4.162 11 C 0.001 3.999 12 N -0.358 5.358 13 C 0.315 3.685 14 O -0.385 6.385 15 C -0.176 4.176 16 H 0.139 0.861 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.175 4.175 20 C 0.024 3.976 21 H 0.126 0.874 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.788 -15.362 4.690 17.850 hybrid contribution 0.252 1.111 0.068 1.141 sum 8.040 -14.251 4.759 17.040 Atomic orbital electron populations 1.69950 1.06047 1.26745 1.50759 1.25018 0.94859 0.99249 0.95282 0.86649 0.79591 0.83096 0.78625 1.20225 1.21231 1.20252 1.21181 0.92964 0.91010 1.50735 0.92810 1.19052 0.93922 0.91194 0.97288 1.22043 0.99692 0.93764 1.00702 1.21726 0.90604 0.85265 1.02354 1.51097 1.44452 1.33623 1.06589 1.21971 0.79003 0.81264 0.86291 1.90716 1.64815 1.70919 1.12082 1.24266 0.97354 1.01074 0.94907 0.86127 1.22079 0.92647 1.01845 0.97737 1.22551 0.97794 0.99605 0.95616 1.22681 0.93712 1.00285 1.00819 1.23235 0.92924 0.90573 0.90851 0.87434 0.92919 0.96479 0.96486 0.93023 0.93231 0.90752 0.90681 0.90815 0.90655 0.90877 0.91010 0.90633 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.60 5.42 -26.73 -0.14 -2.75 16 11 C 0.12 2.13 6.75 -4.04 -0.03 2.10 16 12 N -0.62 -9.58 3.05 -168.85 -0.52 -10.10 16 13 C 0.53 8.64 8.95 -10.25 -0.09 8.55 16 14 O -0.51 -10.49 18.03 5.56 0.10 -10.39 16 15 C -0.15 -1.69 5.00 -90.00 -0.45 -2.14 16 16 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.10 -1.03 6.52 -25.12 -0.16 -1.19 16 18 C -0.12 -1.00 6.90 -24.77 -0.17 -1.17 16 19 C -0.14 -1.44 6.66 -25.14 -0.17 -1.61 16 20 C 0.13 1.42 5.59 -66.20 -0.37 1.05 16 21 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.04 6.92 -51.93 -0.36 0.69 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.14 6.76 -51.93 -0.35 0.79 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -32.90 283.70 -7.87 -40.77 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.31 Total: -4.60 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.14 Total: -10.44 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.22 Total: -36.51 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.90 -7.87 -40.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.854 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds