Wall clock time and date at job start Mon Mar 30 2020 02:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48503 * 109.47087 * 240.00479 * 3 2 1 5 5 H 1.48494 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46865 * 120.00623 * 3 2 1 7 7 C 1.37875 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47445 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.35806 * 132.29571 * 269.95474 * 12 11 10 14 14 O 1.21277 * 134.10528 * 0.02590 * 13 12 11 15 15 C 1.51493 * 91.79201 * 180.02562 * 13 12 11 16 16 H 1.08996 * 116.36246 * 117.57205 * 15 13 12 17 17 C 1.54215 * 113.16351 * 253.60318 * 15 13 12 18 18 C 1.54858 * 104.27365 * 116.87251 * 17 15 13 19 19 C 1.54867 * 102.74277 * 321.93084 * 18 17 15 20 20 C 1.47350 * 132.30457 * 89.99884 * 12 11 10 21 21 H 1.08993 * 116.40680 * 62.44347 * 20 12 11 22 22 H 0.97000 * 120.00081 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47148 * 60.00576 * 9 7 2 24 24 H 1.08997 * 109.47089 * 300.00292 * 9 7 2 25 25 H 1.08998 * 109.47166 * 59.99936 * 10 9 7 26 26 H 1.08997 * 109.47279 * 300.00165 * 10 9 7 27 27 H 1.08998 * 109.47084 * 59.99772 * 11 10 9 28 28 H 1.09003 * 109.47341 * 300.00157 * 11 10 9 29 29 H 1.09003 * 110.46986 * 358.17857 * 17 15 13 30 30 H 1.09000 * 110.47031 * 235.57479 * 17 15 13 31 31 H 1.08997 * 110.76102 * 203.61468 * 18 17 15 32 32 H 1.09003 * 110.75374 * 80.24341 * 18 17 15 33 33 H 1.08997 * 110.47153 * 156.79526 * 19 18 17 34 34 H 1.08998 * 110.46980 * 279.27325 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 3.0261 -6.7958 -1.0047 14 8 2.9771 -6.7382 -2.2151 15 6 3.7740 -7.6713 -0.0203 16 1 3.5456 -8.7367 -0.0495 17 6 5.2766 -7.3362 0.0698 18 6 5.4752 -6.8628 1.5308 19 6 4.1824 -6.0563 1.8074 20 6 3.0758 -6.8546 1.0896 21 1 2.4125 -7.4111 1.7516 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8905 27 1 0.8538 -5.0446 -0.8914 28 1 0.8532 -5.0451 0.8886 29 1 5.5316 -6.5381 -0.6275 30 1 5.8777 -8.2235 -0.1285 31 1 6.3543 -6.2238 1.6138 32 1 5.5508 -7.7151 2.2061 33 1 3.9846 -6.0085 2.8782 34 1 4.2627 -5.0525 1.3902 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687716396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:50 Heat of formation + Delta-G solvation = -49.593463 kcal Electronic energy + Delta-G solvation = -15191.909544 eV Core-core repulsion = 12702.812761 eV Total energy + Delta-G solvation = -2489.096784 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23354 -38.27351 -36.71454 -35.13842 -33.59387 -30.47476 -29.28881 -27.11536 -25.01499 -23.19392 -22.04951 -21.57330 -19.04006 -18.50719 -18.10646 -17.61667 -16.84209 -16.47057 -15.76376 -15.36826 -14.79229 -14.67881 -14.34640 -14.15655 -13.51381 -13.06433 -12.98078 -12.70205 -12.64461 -12.46574 -12.20757 -12.02872 -11.88370 -11.70726 -11.66410 -11.35462 -11.33868 -10.71181 -10.59318 -9.70567 -8.24064 -6.35918 1.36627 1.40101 1.41616 1.48274 1.96690 2.38064 2.93241 3.08649 3.40540 3.68341 3.98903 4.18284 4.26129 4.27770 4.40320 4.46279 4.51803 4.58691 4.74645 4.79874 4.87204 5.04281 5.10932 5.15830 5.21869 5.25253 5.42958 5.46172 5.60106 5.67496 5.78234 5.81026 6.19469 6.79137 7.19199 7.33305 8.87380 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.005922 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.564616 B = 4726.770435 C = 5001.429635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.128 3.872 12 N -0.630 5.630 13 C 0.506 3.494 14 O -0.568 6.568 15 C -0.130 4.130 16 H 0.158 0.842 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.140 4.140 20 C 0.129 3.871 21 H 0.144 0.856 22 H 0.265 0.735 23 H -0.013 1.013 24 H 0.005 0.995 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.664 -16.926 7.338 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.143 4.143 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.294 3.706 14 O -0.446 6.446 15 C -0.151 4.151 16 H 0.175 0.825 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.179 4.179 20 C 0.028 3.972 21 H 0.162 0.838 22 H 0.074 0.926 23 H 0.006 0.994 24 H 0.023 0.977 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.332 -16.621 6.712 20.209 hybrid contribution -0.240 1.494 -0.551 1.610 sum 9.093 -15.127 6.160 18.694 Atomic orbital electron populations 1.70075 1.07721 1.27984 1.51290 1.25969 0.95819 1.03321 0.94515 0.85505 0.78350 0.78081 0.79160 1.19659 1.20416 1.18792 1.21612 0.93343 0.92499 1.51154 0.92685 1.18938 0.94262 0.92682 0.95159 1.21765 0.98442 0.94087 0.99963 1.21415 0.90755 0.84703 1.02518 1.51366 1.43808 1.32711 1.08525 1.23156 0.79126 0.82196 0.86119 1.90664 1.66559 1.72681 1.14698 1.24306 0.97386 1.01993 0.91442 0.82467 1.22151 0.92057 1.02164 0.98157 1.22551 0.96576 1.00333 0.94992 1.22706 0.94797 0.98662 1.01705 1.23692 0.93143 0.89852 0.90479 0.83833 0.92600 0.99441 0.97687 0.91992 0.95523 0.92578 0.88607 0.93821 0.87830 0.90745 0.87758 0.88570 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.28 9.11 25.60 0.23 -32.05 16 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.54 5.42 30.59 0.17 -4.38 16 11 C 0.13 4.59 6.75 86.38 0.58 5.17 16 12 N -0.63 -19.06 3.05 -805.93 -2.46 -21.52 16 13 C 0.51 16.54 8.95 87.67 0.78 17.32 16 14 O -0.57 -24.29 18.03 -3.02 -0.05 -24.34 16 15 C -0.13 -2.48 5.00 -10.36 -0.05 -2.53 16 16 H 0.16 1.93 8.14 -2.39 -0.02 1.92 16 17 C -0.11 -1.81 6.52 31.64 0.21 -1.60 16 18 C -0.11 -1.43 6.90 31.87 0.22 -1.21 16 19 C -0.14 -2.58 6.66 31.63 0.21 -2.37 16 20 C 0.13 2.48 5.59 45.65 0.26 2.74 16 21 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 23 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 24 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.06 2.55 6.92 -2.39 -0.02 2.54 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.04 1.01 7.84 -2.39 -0.02 0.99 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.30 6.76 -2.39 -0.02 1.28 16 Total: -1.00 -74.81 283.70 4.08 -70.73 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.06 Total: 1.86 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.22 Total: -16.71 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.18 Total: -78.66 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.81 4.08 -70.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds