Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.33776 * 133.06937 * 90.00178 * 12 11 10 14 14 O 1.21283 * 133.15603 * 359.69982 * 13 12 11 15 15 C 1.49913 * 93.69691 * 179.70427 * 13 12 11 16 16 H 1.08996 * 115.74578 * 243.62567 * 15 13 12 17 17 C 1.54297 * 114.09930 * 107.17612 * 15 13 12 18 18 C 1.54912 * 104.17234 * 291.52785 * 17 15 13 19 19 C 1.54918 * 102.75536 * 322.31709 * 18 17 15 20 20 C 1.45711 * 133.07531 * 269.65079 * 12 11 10 21 21 H 1.08997 * 115.04448 * 297.39742 * 20 12 11 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.08999 * 110.49051 * 50.20175 * 17 15 13 30 30 H 1.08998 * 110.48961 * 172.72298 * 17 15 13 31 31 H 1.08997 * 110.75214 * 80.63351 * 18 17 15 32 32 H 1.09001 * 110.75181 * 204.00008 * 18 17 15 33 33 H 1.08995 * 110.50955 * 156.57519 * 19 18 17 34 34 H 1.09002 * 110.50727 * 279.14422 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 3.0264 -6.7950 0.9774 14 8 2.9789 -6.7313 2.1877 15 6 3.7729 -7.6810 0.0260 16 1 3.5180 -8.7400 0.0661 17 6 5.2845 -7.3832 -0.0580 18 6 5.3603 -5.9954 -0.7420 19 6 4.2183 -6.0660 -1.7864 20 6 3.0730 -6.8614 -1.0642 21 1 2.3923 -7.4209 -1.7057 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 5.7211 -7.3411 0.9399 30 1 5.7889 -8.1370 -0.6626 31 1 5.1758 -5.1989 -0.0212 32 1 6.3242 -5.8586 -1.2323 33 1 3.8804 -5.0642 -2.0512 34 1 4.5466 -6.6047 -2.6754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687716397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = -25.986042 kcal Electronic energy + Delta-G solvation = -15306.153621 eV Core-core repulsion = 12818.080532 eV Total energy + Delta-G solvation = -2488.073089 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.59452 -36.85749 -35.08517 -33.50096 -31.85434 -29.15367 -28.00625 -25.78138 -23.64532 -21.90907 -20.51233 -20.23587 -17.78340 -17.08220 -16.74501 -16.22499 -15.60973 -14.54634 -14.45577 -14.05460 -13.70537 -13.42683 -12.57506 -12.36394 -11.95757 -11.68772 -11.37429 -11.31204 -11.21888 -11.14131 -10.95174 -10.80707 -10.77016 -10.57578 -9.82070 -9.64293 -9.35328 -9.18980 -8.38774 -8.35818 -6.00944 -4.03421 2.72637 3.21099 3.33051 3.37309 3.40190 3.98303 4.38079 4.44621 4.46134 4.89525 4.99964 5.18525 5.32420 5.34774 5.45810 5.55593 5.59376 5.74946 5.80986 5.91143 5.93939 6.10737 6.11843 6.21920 6.48756 6.61404 6.98174 7.03031 7.09575 7.63760 7.77768 7.97840 8.39493 8.48470 9.02744 9.60599 11.10380 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.006079 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.749306 B = 4604.850911 C = 4852.079792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.123 4.123 11 C 0.123 3.877 12 N -0.611 5.611 13 C 0.525 3.475 14 O -0.521 6.521 15 C -0.159 4.159 16 H 0.121 0.879 17 C -0.100 4.100 18 C -0.128 4.128 19 C -0.128 4.128 20 C 0.120 3.880 21 H 0.107 0.893 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -15.350 -5.155 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.161 4.161 11 C 0.003 3.997 12 N -0.345 5.345 13 C 0.310 3.690 14 O -0.396 6.396 15 C -0.180 4.180 16 H 0.139 0.861 17 C -0.138 4.138 18 C -0.166 4.166 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.125 0.875 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.687 -15.015 -4.495 17.457 hybrid contribution 0.258 1.081 -0.060 1.113 sum 7.945 -13.934 -4.554 16.674 Atomic orbital electron populations 1.69950 1.06048 1.26749 1.50745 1.25018 0.94860 0.99255 0.95278 0.86649 0.79590 0.83089 0.78627 1.20252 1.21234 1.20223 1.21176 0.92966 0.90988 1.50749 0.92796 1.19051 0.93912 0.91186 0.97299 1.22030 0.99681 0.93631 1.00782 1.21727 0.90433 0.85015 1.02482 1.50106 1.43846 1.33366 1.07182 1.21252 0.79468 0.81686 0.86571 1.90704 1.65151 1.71274 1.12498 1.23747 0.97717 1.01070 0.95486 0.86131 1.22061 0.92325 0.97721 1.01738 1.22512 0.98618 0.97113 0.98340 1.23025 0.94323 1.01415 0.97892 1.23292 0.93009 0.90486 0.91655 0.87508 0.92916 0.96465 0.96483 0.93000 0.93178 0.90587 0.90553 0.90682 0.90242 0.90981 0.90776 0.90087 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.57 5.48 -26.74 -0.15 -2.72 16 11 C 0.12 2.16 6.77 -4.04 -0.03 2.13 16 12 N -0.61 -9.40 3.01 -177.89 -0.54 -9.93 16 13 C 0.52 8.61 8.55 -16.52 -0.14 8.47 16 14 O -0.52 -10.80 18.03 5.56 0.10 -10.70 16 15 C -0.16 -1.75 5.06 -91.33 -0.46 -2.21 16 16 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.10 -0.98 6.47 -25.04 -0.16 -1.14 16 18 C -0.13 -1.40 6.55 -24.71 -0.16 -1.56 16 19 C -0.13 -1.34 6.72 -23.53 -0.16 -1.50 16 20 C 0.12 1.33 5.68 -70.72 -0.40 0.93 16 21 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.04 7.09 -51.93 -0.37 0.68 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.01 7.09 -51.93 -0.37 0.64 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -32.96 283.91 -8.00 -40.96 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.35 Total: -4.29 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.21 Total: -10.83 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.20 Total: -36.29 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.10 Total: -10.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.96 -8.00 -40.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.977 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds