Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.33776 * 133.06937 * 90.00178 * 12 11 10 14 14 O 1.21283 * 133.15603 * 359.69982 * 13 12 11 15 15 C 1.49913 * 93.69691 * 179.70427 * 13 12 11 16 16 H 1.08996 * 115.74578 * 243.62567 * 15 13 12 17 17 C 1.54297 * 114.09930 * 107.17612 * 15 13 12 18 18 C 1.54912 * 104.17234 * 291.52785 * 17 15 13 19 19 C 1.54918 * 102.75536 * 322.31709 * 18 17 15 20 20 C 1.45711 * 133.07531 * 269.65079 * 12 11 10 21 21 H 1.08997 * 115.04448 * 297.39742 * 20 12 11 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.08999 * 110.49051 * 50.20175 * 17 15 13 30 30 H 1.08998 * 110.48961 * 172.72298 * 17 15 13 31 31 H 1.08997 * 110.75214 * 80.63351 * 18 17 15 32 32 H 1.09001 * 110.75181 * 204.00008 * 18 17 15 33 33 H 1.08995 * 110.50955 * 156.57519 * 19 18 17 34 34 H 1.09002 * 110.50727 * 279.14422 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 3.0264 -6.7950 0.9774 14 8 2.9789 -6.7313 2.1877 15 6 3.7729 -7.6810 0.0260 16 1 3.5180 -8.7400 0.0661 17 6 5.2845 -7.3832 -0.0580 18 6 5.3603 -5.9954 -0.7420 19 6 4.2183 -6.0660 -1.7864 20 6 3.0730 -6.8614 -1.0642 21 1 2.3923 -7.4209 -1.7057 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 5.7211 -7.3411 0.9399 30 1 5.7889 -8.1370 -0.6626 31 1 5.1758 -5.1989 -0.0212 32 1 6.3242 -5.8586 -1.2323 33 1 3.8804 -5.0642 -2.0512 34 1 4.5466 -6.6047 -2.6754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687716397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = -46.823167 kcal Electronic energy + Delta-G solvation = -15307.057187 eV Core-core repulsion = 12818.080532 eV Total energy + Delta-G solvation = -2488.976655 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.67448 -38.16839 -36.69555 -35.11614 -33.62246 -30.48281 -29.18227 -27.28108 -25.26385 -23.24509 -22.05155 -21.36527 -19.00002 -18.45794 -18.20281 -17.64606 -16.97495 -16.47140 -15.78906 -15.38573 -14.92430 -14.66897 -14.34632 -14.12183 -13.37270 -13.05182 -12.92340 -12.68935 -12.49657 -12.39580 -12.19452 -12.08754 -11.99014 -11.83500 -11.68322 -11.44021 -11.34078 -10.70866 -10.59350 -9.73319 -8.24177 -6.35887 1.36644 1.40002 1.46772 1.48449 2.05267 2.38109 2.97295 3.08626 3.44304 3.61005 3.99217 4.08851 4.21274 4.24317 4.37705 4.50383 4.53151 4.68850 4.77884 4.84021 4.87429 4.99529 5.05048 5.12796 5.15193 5.31354 5.38222 5.44703 5.61225 5.72002 5.78312 5.83227 6.19428 6.79095 7.20688 7.33289 8.87278 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.006079 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.749306 B = 4604.850911 C = 4852.079792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.619 5.619 13 C 0.501 3.499 14 O -0.580 6.580 15 C -0.135 4.135 16 H 0.157 0.843 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.125 4.125 20 C 0.120 3.880 21 H 0.144 0.856 22 H 0.265 0.735 23 H -0.013 1.013 24 H 0.005 0.995 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -16.654 -7.225 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.141 4.141 11 C 0.009 3.991 12 N -0.351 5.351 13 C 0.289 3.711 14 O -0.459 6.459 15 C -0.156 4.156 16 H 0.175 0.825 17 C -0.133 4.133 18 C -0.172 4.172 19 C -0.163 4.163 20 C 0.018 3.982 21 H 0.161 0.839 22 H 0.074 0.926 23 H 0.006 0.994 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.275 -16.340 -6.608 19.917 hybrid contribution -0.239 1.488 0.592 1.619 sum 9.036 -14.852 -6.015 18.396 Atomic orbital electron populations 1.70075 1.07709 1.27979 1.51288 1.25964 0.95818 1.03305 0.94525 0.85511 0.78355 0.78106 0.79155 1.18789 1.20418 1.19682 1.21605 0.93331 0.92487 1.51147 0.92705 1.18936 0.94248 0.92647 0.95195 1.21736 0.98406 0.93984 0.99969 1.21414 0.90576 0.84421 1.02700 1.50353 1.43191 1.32443 1.09129 1.22492 0.79609 0.82635 0.86347 1.90654 1.66976 1.73107 1.15199 1.23809 0.97978 1.01870 0.91987 0.82534 1.22141 0.91443 0.97937 1.01745 1.22537 1.00058 0.96660 0.97916 1.23068 0.93636 1.00603 0.98967 1.23743 0.93369 0.89754 0.91290 0.83884 0.92600 0.99426 0.97625 0.91996 0.95586 0.92429 0.88354 0.91995 0.85961 0.95311 0.88680 0.92456 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 8 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.46 5.48 30.59 0.17 -4.29 16 11 C 0.13 4.65 6.77 86.38 0.58 5.24 16 12 N -0.62 -18.66 3.01 -835.67 -2.52 -21.18 16 13 C 0.50 16.41 8.55 84.52 0.72 17.13 16 14 O -0.58 -25.07 18.03 -3.04 -0.05 -25.13 16 15 C -0.14 -2.56 5.06 -11.24 -0.06 -2.62 16 16 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 17 C -0.09 -1.54 6.47 31.69 0.21 -1.33 16 18 C -0.13 -2.65 6.55 31.90 0.21 -2.45 16 19 C -0.12 -2.21 6.72 32.67 0.22 -1.99 16 20 C 0.12 2.28 5.68 43.61 0.25 2.53 16 21 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 23 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.06 2.54 7.09 -2.39 -0.02 2.53 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.32 7.09 -2.39 -0.02 1.30 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.52 283.91 3.94 -71.58 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 1.06 Total: 2.23 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 3.14 Total: -17.55 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -2.23 Total: -78.23 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.52 3.94 -71.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687716397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.753 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds