Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46763 * 124.34850 * 269.73013 * 11 10 9 13 13 C 1.54664 * 105.38489 * 162.85582 * 12 11 10 14 14 H 1.08989 * 110.85510 * 143.78663 * 13 12 11 15 15 C 1.53000 * 111.19249 * 267.59489 * 13 12 11 16 16 C 1.52998 * 117.49814 * 242.48306 * 15 13 12 17 17 C 1.52995 * 117.49957 * 173.86031 * 15 13 12 18 18 C 1.54631 * 101.68118 * 25.76222 * 13 12 11 19 19 C 1.34410 * 124.34868 * 90.02995 * 11 10 9 20 20 O 1.21286 * 124.94496 * 0.38333 * 19 11 10 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09003 * 110.24860 * 281.98397 * 12 11 10 27 27 H 1.08997 * 110.25048 * 43.98446 * 12 11 10 28 28 H 1.09003 * 115.55036 * 28.18973 * 15 13 12 29 29 H 1.08999 * 117.49799 * 359.97438 * 16 15 13 30 30 H 1.08999 * 117.49855 * 145.01554 * 16 15 13 31 31 H 1.09001 * 117.49868 * 214.97690 * 17 15 13 32 32 H 1.08999 * 117.49641 * 359.97438 * 17 15 13 33 33 H 1.08993 * 110.49032 * 216.31333 * 18 13 12 34 34 H 1.09003 * 110.48318 * 93.66423 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.1037 -5.6457 1.2301 13 6 0.0173 -6.6461 0.7709 14 1 0.0902 -7.5805 1.3272 15 6 -1.3822 -6.0417 0.9022 16 6 -2.3581 -6.7220 1.8642 17 6 -2.5568 -6.8537 0.3529 18 6 0.3924 -6.8557 -0.7145 19 6 1.1346 -5.5924 -1.0915 20 8 1.3554 -5.2294 -2.2275 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 1.9530 -6.1776 1.6591 27 1 0.6888 -4.9475 1.9571 28 1 -1.4357 -4.9565 0.8143 29 1 -2.0033 -7.6004 2.4033 30 1 -3.0539 -6.0844 2.4097 31 1 -3.3833 -6.3028 -0.0959 32 1 -2.3325 -7.8184 -0.1023 33 1 -0.5053 -6.9666 -1.3227 34 1 1.0395 -7.7257 -0.8254 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690900176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -23.448280 kcal Electronic energy + Delta-G solvation = -15298.068205 eV Core-core repulsion = 12810.105162 eV Total energy + Delta-G solvation = -2487.963043 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14974 -37.39078 -35.51851 -33.64465 -31.92729 -28.96180 -27.39831 -24.84961 -22.93428 -22.34919 -21.34424 -19.99667 -18.71390 -16.61990 -15.98920 -15.96067 -15.27510 -14.70515 -14.47061 -13.97985 -13.38743 -13.02368 -12.63958 -12.41283 -12.35611 -12.08915 -11.54606 -11.42210 -11.28003 -10.91067 -10.79019 -10.71773 -10.27352 -10.05148 -9.93543 -9.81515 -9.32363 -9.07780 -8.35725 -7.96831 -6.01003 -4.04498 3.12400 3.33813 3.37937 3.40381 3.64263 3.76078 4.46636 4.46969 4.64280 4.69339 4.94419 5.13526 5.19571 5.35030 5.43241 5.50664 5.62061 5.65794 5.78874 5.86886 5.95879 6.10211 6.10833 6.13261 6.35349 6.50106 6.84177 7.05241 7.55742 7.69582 7.89936 7.99214 8.35520 8.75207 9.02156 9.59409 11.10352 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.006781 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.623878 B = 4127.924469 C = 4546.425706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.127 3.873 11 N -0.611 5.611 12 C 0.108 3.892 13 C -0.068 4.068 14 H 0.092 0.908 15 C -0.145 4.145 16 C -0.177 4.177 17 C -0.179 4.179 18 C -0.151 4.151 19 C 0.512 3.488 20 O -0.539 6.539 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -15.060 5.053 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.007 3.993 11 N -0.344 5.344 12 C -0.016 4.016 13 C -0.087 4.087 14 H 0.111 0.889 15 C -0.164 4.164 16 C -0.214 4.214 17 C -0.216 4.216 18 C -0.191 4.191 19 C 0.299 3.701 20 O -0.417 6.417 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.195 -14.663 4.465 15.484 hybrid contribution 0.345 1.028 0.119 1.090 sum -1.850 -13.635 4.584 14.503 Atomic orbital electron populations 1.69962 1.06099 1.26775 1.50343 1.24996 0.94855 0.99284 0.95108 0.86612 0.79547 0.82914 0.78654 1.20135 1.21262 1.20206 1.21062 0.93013 0.90750 1.51361 0.92545 1.19390 0.94423 0.91010 0.97666 1.21787 0.95098 0.81142 1.01301 1.48523 1.56390 1.23251 1.06219 1.22096 0.96328 0.94606 0.88561 1.21736 0.92902 0.98453 0.95606 0.88936 1.22317 0.89745 0.99574 1.04715 1.22999 1.02985 1.02789 0.92604 1.22929 1.00463 1.01832 0.96416 1.22429 1.01960 0.97680 0.97016 1.20730 0.79219 0.85408 0.84776 1.90700 1.57939 1.71933 1.21100 0.92904 0.96504 0.96126 0.91189 0.91710 0.91479 0.89969 0.86912 0.88881 0.88845 0.88790 0.88813 0.88270 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 10 C 0.13 2.74 5.87 -4.04 -0.02 2.72 16 11 N -0.61 -11.27 2.93 -172.29 -0.51 -11.78 16 12 C 0.11 1.47 6.90 -3.02 -0.02 1.45 16 13 C -0.07 -0.78 3.31 -88.89 -0.29 -1.08 16 14 H 0.09 0.80 7.97 -51.94 -0.41 0.39 16 15 C -0.15 -1.79 5.15 -90.62 -0.47 -2.26 16 16 C -0.18 -1.76 10.19 -26.73 -0.27 -2.03 16 17 C -0.18 -1.90 9.49 -26.74 -0.25 -2.15 16 18 C -0.15 -1.99 6.35 -26.74 -0.17 -2.16 16 19 C 0.51 9.78 8.02 -10.86 -0.09 9.69 16 20 O -0.54 -12.81 17.59 5.55 0.10 -12.72 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 28 H 0.11 1.75 8.11 -51.93 -0.42 1.32 16 29 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.10 1.27 7.25 -51.93 -0.38 0.90 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -33.39 288.20 -7.87 -41.26 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.37 Total: -2.17 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.15 Total: -9.32 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.23 Total: -38.28 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.10 Total: -12.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.39 -7.87 -41.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690900176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.809 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds