Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46763 * 124.34850 * 269.73013 * 11 10 9 13 13 C 1.54664 * 105.38489 * 162.85582 * 12 11 10 14 14 H 1.08989 * 110.85510 * 143.78663 * 13 12 11 15 15 C 1.53000 * 111.19249 * 267.59489 * 13 12 11 16 16 C 1.52998 * 117.49814 * 242.48306 * 15 13 12 17 17 C 1.52995 * 117.49957 * 173.86031 * 15 13 12 18 18 C 1.54631 * 101.68118 * 25.76222 * 13 12 11 19 19 C 1.34410 * 124.34868 * 90.02995 * 11 10 9 20 20 O 1.21286 * 124.94496 * 0.38333 * 19 11 10 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09003 * 110.24860 * 281.98397 * 12 11 10 27 27 H 1.08997 * 110.25048 * 43.98446 * 12 11 10 28 28 H 1.09003 * 115.55036 * 28.18973 * 15 13 12 29 29 H 1.08999 * 117.49799 * 359.97438 * 16 15 13 30 30 H 1.08999 * 117.49855 * 145.01554 * 16 15 13 31 31 H 1.09001 * 117.49868 * 214.97690 * 17 15 13 32 32 H 1.08999 * 117.49641 * 359.97438 * 17 15 13 33 33 H 1.08993 * 110.49032 * 216.31333 * 18 13 12 34 34 H 1.09003 * 110.48318 * 93.66423 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.1037 -5.6457 1.2301 13 6 0.0173 -6.6461 0.7709 14 1 0.0902 -7.5805 1.3272 15 6 -1.3822 -6.0417 0.9022 16 6 -2.3581 -6.7220 1.8642 17 6 -2.5568 -6.8537 0.3529 18 6 0.3924 -6.8557 -0.7145 19 6 1.1346 -5.5924 -1.0915 20 8 1.3554 -5.2294 -2.2275 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 1.9530 -6.1776 1.6591 27 1 0.6888 -4.9475 1.9571 28 1 -1.4357 -4.9565 0.8143 29 1 -2.0033 -7.6004 2.4033 30 1 -3.0539 -6.0844 2.4097 31 1 -3.3833 -6.3028 -0.0959 32 1 -2.3325 -7.8184 -0.1023 33 1 -0.5053 -6.9666 -1.3227 34 1 1.0395 -7.7257 -0.8254 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690900176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -44.799393 kcal Electronic energy + Delta-G solvation = -15298.994059 eV Core-core repulsion = 12810.105162 eV Total energy + Delta-G solvation = -2488.888897 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47663 -38.53369 -37.02292 -35.56751 -33.65536 -30.73406 -28.58205 -26.81463 -24.06630 -23.37898 -23.05613 -21.01760 -20.25004 -18.68703 -17.42870 -17.19145 -16.67649 -16.45797 -15.95958 -15.14295 -14.90848 -14.64101 -14.24522 -14.12462 -13.64717 -13.34114 -13.16971 -12.85521 -12.61722 -12.46042 -12.28455 -11.97761 -11.93146 -11.75916 -11.46621 -11.10726 -11.00588 -10.63449 -10.57401 -9.55120 -8.25692 -6.39336 1.37338 1.42019 1.49551 1.64316 2.21290 2.41140 2.86827 3.07453 3.44991 3.57276 3.76221 3.98307 4.20026 4.28710 4.35543 4.49819 4.52142 4.57097 4.73842 4.74797 4.84733 4.86744 4.96996 5.09609 5.19720 5.29495 5.34073 5.39451 5.43877 5.58573 5.80745 6.12911 6.34588 6.75965 7.24593 7.30951 8.86304 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.006781 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.623878 B = 4127.924469 C = 4546.425706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.026 3.974 10 C 0.140 3.860 11 N -0.617 5.617 12 C 0.100 3.900 13 C -0.050 4.050 14 H 0.143 0.857 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.177 4.177 18 C -0.136 4.136 19 C 0.492 3.508 20 O -0.601 6.601 21 H 0.264 0.736 22 H -0.002 1.002 23 H -0.031 1.031 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -16.887 6.689 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.086 0.914 9 C -0.012 4.012 10 C 0.018 3.982 11 N -0.349 5.349 12 C -0.022 4.022 13 C -0.068 4.068 14 H 0.161 0.839 15 C -0.192 4.192 16 C -0.193 4.193 17 C -0.214 4.214 18 C -0.175 4.175 19 C 0.282 3.718 20 O -0.483 6.483 21 H 0.073 0.927 22 H 0.017 0.983 23 H -0.012 1.012 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.395 -16.523 6.149 17.685 hybrid contribution 0.025 1.612 -0.384 1.657 sum -1.370 -14.911 5.765 16.046 Atomic orbital electron populations 1.70117 1.08060 1.28008 1.51099 1.26054 0.95803 1.03709 0.94273 0.85395 0.78192 0.77424 0.79394 1.19455 1.20745 1.18299 1.21539 0.93796 0.91828 1.51478 0.91446 1.19181 0.94516 0.93265 0.94212 1.21352 0.93944 0.81323 1.01607 1.48647 1.55732 1.22170 1.08358 1.22477 0.98543 0.94808 0.86384 1.21798 0.90996 0.99457 0.94581 0.83931 1.22201 0.91566 0.97362 1.08093 1.23099 1.01050 1.02883 0.92233 1.23027 0.98886 1.02114 0.97352 1.22464 1.01765 0.95208 0.98099 1.21942 0.78731 0.87253 0.83909 1.90650 1.60217 1.73920 1.23496 0.92687 0.98343 1.01216 0.93004 0.89065 0.87702 0.91063 0.91782 0.85854 0.89349 0.89955 0.86475 0.87874 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.88 13.29 21.45 0.28 -58.59 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 8 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.48 5.30 29.85 0.16 1.64 16 10 C 0.14 6.23 5.87 86.38 0.51 6.74 16 11 N -0.62 -23.01 2.93 -817.60 -2.40 -25.41 16 12 C 0.10 2.52 6.90 86.90 0.60 3.12 16 13 C -0.05 -0.99 3.31 -9.67 -0.03 -1.02 16 14 H 0.14 1.54 7.97 -2.39 -0.02 1.52 16 15 C -0.17 -4.11 5.15 -10.80 -0.06 -4.17 16 16 C -0.16 -2.68 10.19 30.59 0.31 -2.37 16 17 C -0.18 -3.40 9.49 30.59 0.29 -3.11 16 18 C -0.14 -3.25 6.35 30.59 0.19 -3.06 16 19 C 0.49 19.08 8.02 87.90 0.71 19.79 16 20 O -0.60 -29.96 17.59 -3.05 -0.05 -30.02 16 21 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 23 H -0.03 -2.01 8.14 -2.38 -0.02 -2.03 16 24 H 0.05 2.48 7.92 -2.39 -0.02 2.46 16 25 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 26 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 1.97 7.92 -2.39 -0.02 1.96 16 28 H 0.06 2.13 8.11 -2.39 -0.02 2.12 16 29 H 0.12 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.10 2.45 7.25 -2.39 -0.02 2.43 16 34 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -78.26 288.20 4.29 -73.96 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.06 Total: 6.88 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.37 Total: -14.12 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.11 Total: -84.00 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -78.26 4.29 -73.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690900176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.166 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds