Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99416 * 2 1 4 4 H 1.48503 * 109.47542 * 269.99799 * 3 2 1 5 5 H 1.48500 * 109.47471 * 30.00444 * 3 2 1 6 6 H 1.48507 * 109.46922 * 150.00255 * 3 2 1 7 7 C 1.37874 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47540 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47419 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47369 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99971 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46902 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46889 * 180.02562 * 14 13 12 16 16 C 1.41385 * 126.58187 * 90.00355 * 15 14 13 17 17 C 1.34512 * 106.83926 * 180.25995 * 16 15 14 18 18 O 1.34305 * 108.42433 * 359.63135 * 17 16 15 19 19 C 1.34305 * 109.47225 * 0.37505 * 18 17 16 20 20 H 0.96994 * 120.00378 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46759 * 59.99684 * 9 7 2 22 22 H 1.09000 * 109.47219 * 300.00321 * 9 7 2 23 23 H 1.08997 * 109.46736 * 59.99981 * 10 9 7 24 24 H 1.08995 * 109.46952 * 300.00368 * 10 9 7 25 25 H 1.09002 * 109.47305 * 59.99648 * 11 10 9 26 26 H 1.09009 * 109.47068 * 300.00210 * 11 10 9 27 27 H 1.00899 * 111.00224 * 303.94938 * 12 11 10 28 28 H 1.08994 * 109.47540 * 60.00184 * 13 12 11 29 29 H 1.09009 * 109.47266 * 299.99692 * 13 12 11 30 30 H 1.09005 * 109.47346 * 59.99946 * 14 13 12 31 31 H 1.09000 * 109.47009 * 299.99983 * 14 13 12 32 32 H 1.08002 * 126.57514 * 359.97438 * 16 15 14 33 33 H 1.07998 * 125.78467 * 179.77218 * 17 16 15 34 34 H 1.08000 * 125.78555 * 179.79179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0018 11 6 1.4807 -4.9870 -0.0025 12 7 2.4353 -6.1035 -0.0031 13 6 1.7351 -7.3949 -0.0031 14 6 2.7601 -8.5308 -0.0031 15 6 2.0418 -9.8556 -0.0038 16 6 1.6406 -10.5960 -1.1395 17 6 1.0318 -11.7063 -0.6856 18 8 1.0501 -11.6818 0.6571 19 6 1.6587 -10.5603 1.0761 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6249 -2.5571 0.8896 23 1 2.8728 -3.6046 0.8877 24 1 2.8715 -3.6038 -0.8922 25 1 0.8536 -5.0442 -0.8922 26 1 0.8544 -5.0455 0.8878 27 1 3.0701 -6.0361 -0.7845 28 1 1.1099 -7.4692 -0.8928 29 1 1.1105 -7.4696 0.8872 30 1 3.3851 -8.4564 0.8869 31 1 3.3850 -8.4563 -0.8931 32 1 1.7898 -10.3204 -2.1730 33 1 0.6032 -12.4864 -1.2973 34 1 1.8144 -10.2731 2.1055 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692737409.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -29.948588 kcal Electronic energy + Delta-G solvation = -14085.610630 eV Core-core repulsion = 11597.365712 eV Total energy + Delta-G solvation = -2488.244918 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.41737 -38.13311 -36.01057 -34.82398 -33.10325 -31.21159 -29.41841 -27.47385 -24.56271 -23.24762 -22.46161 -21.96137 -20.97405 -18.52509 -18.24186 -17.09901 -16.80325 -16.55275 -15.80433 -15.50105 -15.30883 -15.10244 -14.28071 -13.97647 -13.65834 -13.56622 -13.19078 -12.98297 -12.86834 -12.68657 -12.45487 -12.22970 -11.90731 -11.50352 -11.39136 -11.12788 -10.55497 -10.54208 -9.44925 -9.37199 -8.20201 -6.31527 0.89456 1.40393 1.42098 1.53517 1.67629 2.33680 2.41367 3.12825 3.23598 3.92655 4.06109 4.14684 4.20978 4.30661 4.40159 4.46717 4.66701 4.71184 4.83923 4.86639 4.94998 5.06222 5.15534 5.23759 5.27345 5.36007 5.51927 5.61819 5.74552 5.85593 6.02971 6.23114 6.26647 6.48518 6.85580 7.37853 8.91893 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.091432 B = 0.003316 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.163707 B = 8441.952581 C = 8533.905241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.691 5.691 13 C 0.068 3.932 14 C -0.038 4.038 15 C -0.194 4.194 16 C -0.231 4.231 17 C -0.043 4.043 18 O -0.192 6.192 19 C -0.047 4.047 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.009 1.009 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.021 0.979 26 H 0.060 0.940 27 H 0.345 0.655 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.234 0.766 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -22.142 -1.201 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.130 4.130 11 C -0.058 4.058 12 N -0.323 5.323 13 C -0.061 4.061 14 C -0.076 4.076 15 C -0.196 4.196 16 C -0.250 4.250 17 C -0.110 4.110 18 O -0.088 6.088 19 C -0.114 4.114 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.250 0.750 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.946 -22.251 -0.327 22.600 hybrid contribution -0.304 1.167 -1.118 1.644 sum 3.642 -21.084 -1.445 21.445 Atomic orbital electron populations 1.70099 1.07859 1.27813 1.51760 1.26021 0.95807 1.03503 0.94699 0.85414 0.78657 0.78235 0.78540 1.19678 1.20694 1.18683 1.21713 0.93603 0.92384 1.50469 0.92125 1.18983 0.94462 0.93199 0.94722 1.21378 0.98018 0.92772 1.00881 1.21831 0.94031 0.90384 0.99540 1.60479 1.20012 1.01471 1.50312 1.21910 0.95857 0.88143 1.00195 1.19827 0.96199 0.87859 1.03711 1.20619 1.06163 0.99334 0.93477 1.22060 1.05540 0.96891 1.00492 1.24677 1.03967 1.01779 0.80563 1.84074 1.61960 1.39174 1.23557 1.24379 1.00245 0.85949 1.00862 0.92747 0.99152 0.99064 0.92733 0.92937 0.96089 0.92143 0.83645 0.95875 0.91663 0.89851 0.90597 0.82682 0.75002 0.76130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.92 5.41 30.59 0.17 -3.75 16 11 C 0.07 2.53 5.68 86.30 0.49 3.02 16 12 N -0.69 -19.85 6.50 -513.88 -3.34 -23.19 16 13 C 0.07 1.67 5.67 86.30 0.49 2.16 16 14 C -0.04 -0.76 5.99 29.85 0.18 -0.58 16 15 C -0.19 -3.88 5.42 -19.94 -0.11 -3.98 16 16 C -0.23 -4.21 10.87 22.19 0.24 -3.97 16 17 C -0.04 -0.67 12.09 66.97 0.81 0.14 16 18 O -0.19 -3.66 10.65 -2.52 -0.03 -3.69 16 19 C -0.05 -0.86 12.01 66.97 0.80 -0.06 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.35 9.00 8.73 -89.69 -0.78 8.22 16 28 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.23 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -67.58 294.36 3.14 -64.44 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.28 Total: 9.96 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.91 Total: -36.76 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -3.06 Total: -80.82 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.03 Total: -3.69 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.58 3.14 -64.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692737409.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.493 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds