Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99815 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00310 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99383 * 180.02562 * 12 11 10 15 15 C 1.53000 * 119.29780 * 109.05488 * 14 12 11 16 16 C 1.53881 * 121.32497 * 180.88555 * 14 12 11 17 17 H 1.08999 * 121.33273 * 0.56006 * 16 14 12 18 18 C 1.54266 * 106.59693 * 138.06418 * 16 14 12 19 19 C 1.54889 * 104.19548 * 336.38672 * 18 16 14 20 20 C 1.54259 * 117.41465 * 314.70812 * 14 12 11 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 25 25 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 26 26 H 0.96996 * 119.99617 * 0.02562 * 11 10 9 27 27 H 1.08998 * 117.45880 * 218.90600 * 15 14 12 28 28 H 1.09003 * 117.46341 * 3.69941 * 15 14 12 29 29 H 1.08998 * 110.48589 * 217.71030 * 18 16 14 30 30 H 1.09004 * 110.60058 * 95.11644 * 18 16 14 31 31 H 1.08995 * 110.75638 * 279.62808 * 19 18 16 32 32 H 1.09000 * 110.91645 * 156.33132 * 19 18 16 33 33 H 1.09001 * 110.48898 * 2.30690 * 20 14 12 34 34 H 1.09000 * 110.49127 * 124.82667 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0215 -2.6366 -0.0171 11 7 5.4865 -2.6367 -0.0239 12 6 6.1603 -3.8039 -0.0286 13 8 5.5539 -4.8542 -0.0277 14 6 7.6673 -3.8039 -0.0349 15 6 8.4213 -4.2415 1.2224 16 6 8.4672 -5.1182 -0.0608 17 1 7.9666 -6.0861 -0.0843 18 6 9.6316 -4.9060 -1.0502 19 6 9.1362 -3.7724 -1.9823 20 6 8.3734 -2.8390 -1.0096 21 1 -0.4849 0.8401 0.0041 22 1 3.8711 -0.6782 -0.9024 23 1 3.8785 -0.6825 0.8776 24 1 3.6619 -3.1523 0.8734 25 1 3.6544 -3.1487 -0.9066 26 1 5.9715 -1.7967 -0.0242 27 1 9.3247 -3.6906 1.4839 28 1 7.8291 -4.5992 2.0647 29 1 9.8175 -5.8155 -1.6213 30 1 10.5333 -4.5979 -0.5209 31 1 8.4654 -4.1657 -2.7460 32 1 9.9762 -3.2499 -2.4400 33 1 7.6411 -2.2402 -1.5512 34 1 9.0690 -2.1947 -0.4717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693226008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -28.954900 kcal Electronic energy + Delta-G solvation = -14980.451686 eV Core-core repulsion = 12492.249857 eV Total energy + Delta-G solvation = -2488.201828 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34556 -37.95239 -34.96224 -32.78981 -31.71419 -30.33479 -28.43245 -25.20823 -23.13531 -21.96419 -20.82377 -20.41550 -18.88458 -17.03974 -16.89262 -15.58371 -15.19773 -14.67083 -14.32751 -14.17795 -13.47062 -13.36621 -13.16537 -12.96431 -12.60054 -11.84534 -11.49760 -11.30269 -11.26692 -11.19656 -11.09725 -10.45235 -10.37360 -10.27002 -9.95855 -9.79094 -9.42385 -9.24132 -8.64027 -8.50973 -6.11289 -4.11349 2.77883 3.24951 3.32605 3.33986 3.47092 3.63580 4.28964 4.37545 4.47605 4.65125 4.96283 5.07819 5.19434 5.21660 5.28337 5.39871 5.51097 5.58572 5.66209 5.76170 5.88975 5.92077 6.05722 6.14956 6.20616 6.21853 6.56001 6.77911 7.14248 7.23220 7.66597 7.94680 8.43700 8.61105 8.93136 9.48854 11.01822 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047845 B = 0.005518 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.077229 B = 5073.419831 C = 5361.755802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.721 5.721 12 C 0.548 3.452 13 O -0.548 6.548 14 C -0.175 4.175 15 C -0.124 4.124 16 C -0.132 4.132 17 H 0.119 0.881 18 C -0.096 4.096 19 C -0.123 4.123 20 C -0.089 4.089 21 H 0.265 0.735 22 H 0.017 0.983 23 H 0.022 0.978 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.396 0.604 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.806 -4.607 -0.961 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.007 3.993 11 N -0.370 5.370 12 C 0.333 3.667 13 O -0.426 6.426 14 C -0.179 4.179 15 C -0.161 4.161 16 C -0.151 4.151 17 H 0.137 0.863 18 C -0.133 4.133 19 C -0.160 4.160 20 C -0.126 4.126 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.230 0.770 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.155 -5.231 -0.982 20.846 hybrid contribution 0.366 1.397 -0.004 1.444 sum 20.520 -3.834 -0.986 20.899 Atomic orbital electron populations 1.69908 1.06294 1.27048 1.50440 1.25001 0.94762 0.99139 0.94357 0.86750 0.80283 0.83540 0.78506 1.20211 1.21244 1.19081 1.20923 0.88654 0.94902 1.51647 0.90636 1.19791 0.97998 0.91331 0.96823 1.21520 0.76037 1.00135 1.01576 1.46251 1.08957 1.07854 1.73974 1.19304 0.87277 0.84024 0.76096 1.90672 1.69816 1.31638 1.50474 1.22473 0.91882 1.00667 1.02834 1.23451 1.00817 1.01179 0.90665 1.23725 0.98093 0.94926 0.98344 0.86275 1.21981 0.96461 0.98905 0.95960 1.22679 0.99587 0.95974 0.97806 1.21956 0.98715 0.96441 0.95512 0.92548 0.96444 0.95990 0.91984 0.92000 0.77018 0.88162 0.87891 0.90993 0.91194 0.91110 0.91065 0.90714 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.50 4.16 -27.89 -0.12 -0.62 16 10 C 0.13 2.72 5.61 -4.04 -0.02 2.70 16 11 N -0.72 -12.43 5.38 -60.29 -0.32 -12.76 16 12 C 0.55 9.47 7.41 -10.99 -0.08 9.39 16 13 O -0.55 -11.63 16.79 5.56 0.09 -11.54 16 14 C -0.18 -2.24 2.60 -154.54 -0.40 -2.64 16 15 C -0.12 -1.33 10.00 -25.42 -0.25 -1.58 16 16 C -0.13 -1.51 6.64 -88.19 -0.59 -2.09 16 17 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.10 -0.84 6.64 -25.07 -0.17 -1.01 16 19 C -0.12 -1.12 6.91 -24.73 -0.17 -1.29 16 20 C -0.09 -0.91 6.18 -25.07 -0.15 -1.06 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 23 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.40 5.79 7.99 -40.82 -0.33 5.47 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.80 7.61 -51.93 -0.40 0.41 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -32.25 283.72 -7.54 -39.78 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.30 Total: 1.92 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.38 Total: -11.43 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.45 Total: -39.47 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.25 -7.54 -39.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693226008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.829 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds