Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99815 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00310 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99383 * 180.02562 * 12 11 10 15 15 C 1.53000 * 119.29780 * 109.05488 * 14 12 11 16 16 C 1.53881 * 121.32497 * 180.88555 * 14 12 11 17 17 H 1.08999 * 121.33273 * 0.56006 * 16 14 12 18 18 C 1.54266 * 106.59693 * 138.06418 * 16 14 12 19 19 C 1.54889 * 104.19548 * 336.38672 * 18 16 14 20 20 C 1.54259 * 117.41465 * 314.70812 * 14 12 11 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 25 25 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 26 26 H 0.96996 * 119.99617 * 0.02562 * 11 10 9 27 27 H 1.08998 * 117.45880 * 218.90600 * 15 14 12 28 28 H 1.09003 * 117.46341 * 3.69941 * 15 14 12 29 29 H 1.08998 * 110.48589 * 217.71030 * 18 16 14 30 30 H 1.09004 * 110.60058 * 95.11644 * 18 16 14 31 31 H 1.08995 * 110.75638 * 279.62808 * 19 18 16 32 32 H 1.09000 * 110.91645 * 156.33132 * 19 18 16 33 33 H 1.09001 * 110.48898 * 2.30690 * 20 14 12 34 34 H 1.09000 * 110.49127 * 124.82667 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0215 -2.6366 -0.0171 11 7 5.4865 -2.6367 -0.0239 12 6 6.1603 -3.8039 -0.0286 13 8 5.5539 -4.8542 -0.0277 14 6 7.6673 -3.8039 -0.0349 15 6 8.4213 -4.2415 1.2224 16 6 8.4672 -5.1182 -0.0608 17 1 7.9666 -6.0861 -0.0843 18 6 9.6316 -4.9060 -1.0502 19 6 9.1362 -3.7724 -1.9823 20 6 8.3734 -2.8390 -1.0096 21 1 -0.4849 0.8401 0.0041 22 1 3.8711 -0.6782 -0.9024 23 1 3.8785 -0.6825 0.8776 24 1 3.6619 -3.1523 0.8734 25 1 3.6544 -3.1487 -0.9066 26 1 5.9715 -1.7967 -0.0242 27 1 9.3247 -3.6906 1.4839 28 1 7.8291 -4.5992 2.0647 29 1 9.8175 -5.8155 -1.6213 30 1 10.5333 -4.5979 -0.5209 31 1 8.4654 -4.1657 -2.7460 32 1 9.9762 -3.2499 -2.4400 33 1 7.6411 -2.2402 -1.5512 34 1 9.0690 -2.1947 -0.4717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693226008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -50.690218 kcal Electronic energy + Delta-G solvation = -14981.394200 eV Core-core repulsion = 12492.249857 eV Total energy + Delta-G solvation = -2489.144342 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46478 -39.16813 -36.67136 -34.82340 -32.52461 -32.14360 -29.38426 -26.98039 -24.27008 -23.08037 -22.59070 -21.25992 -20.15169 -19.00053 -18.12142 -16.93821 -16.57917 -16.23380 -15.83625 -15.58868 -14.85991 -14.67050 -14.37045 -14.05299 -13.91080 -13.38660 -13.08595 -12.79316 -12.29156 -12.19218 -12.02316 -11.97446 -11.83919 -11.77567 -11.54594 -11.31513 -10.80721 -10.70227 -10.63713 -10.10338 -8.32030 -6.39861 1.37977 1.40818 1.49067 1.52260 2.18797 2.35575 2.60669 3.02932 3.48868 3.61040 3.75211 3.93216 4.25886 4.31573 4.36563 4.42852 4.51551 4.67354 4.69694 4.75583 4.81888 4.98852 5.01444 5.11146 5.17718 5.21758 5.29609 5.35837 5.38828 5.48380 5.61274 6.19572 6.57167 6.68369 7.23369 7.25351 8.84935 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047845 B = 0.005518 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.077229 B = 5073.419831 C = 5361.755802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.237 1.237 7 C -0.542 4.542 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.143 3.857 11 N -0.710 5.710 12 C 0.542 3.458 13 O -0.597 6.597 14 C -0.191 4.191 15 C -0.106 4.106 16 C -0.137 4.137 17 H 0.095 0.905 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.084 4.084 21 H 0.269 0.731 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.413 0.587 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.695 -2.611 -0.941 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.160 1.160 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.020 3.980 11 N -0.361 5.361 12 C 0.330 3.670 13 O -0.479 6.479 14 C -0.194 4.194 15 C -0.143 4.143 16 C -0.156 4.156 17 H 0.114 0.886 18 C -0.125 4.125 19 C -0.160 4.160 20 C -0.122 4.122 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.250 0.750 27 H 0.154 0.846 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.085 -3.233 -0.963 24.320 hybrid contribution -0.947 0.636 -0.002 1.141 sum 23.138 -2.597 -0.965 23.303 Atomic orbital electron populations 1.70079 1.08617 1.28512 1.51821 1.26093 0.95699 1.03903 0.93515 0.85523 0.79672 0.77205 0.79405 1.18873 1.21079 1.15978 1.21243 0.91544 0.93387 1.51854 0.95485 1.19636 0.94478 0.92632 0.98105 1.21049 0.78612 0.98640 0.99737 1.46016 1.07168 1.09058 1.73857 1.20196 0.89474 0.82937 0.74409 1.90646 1.71404 1.33301 1.52499 1.22501 0.88471 1.02945 1.05472 1.23588 1.01117 1.00173 0.89466 1.23874 0.98657 0.93400 0.99691 0.88645 1.22003 0.96021 0.99216 0.95278 1.22699 0.99996 0.96008 0.97289 1.22027 0.98849 0.96198 0.95094 0.92249 0.94565 0.94422 0.93992 0.94045 0.74999 0.84647 0.89107 0.90472 0.88695 0.92892 0.88479 0.91517 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.01 0.29 5.47 84.66 0.46 0.76 16 3 Si 0.96 42.46 27.47 68.60 1.88 44.34 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 7 C -0.54 -31.49 9.66 25.60 0.25 -31.24 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 10 C 0.14 6.15 5.61 86.38 0.48 6.64 16 11 N -0.71 -23.96 5.38 -463.05 -2.49 -26.45 16 12 C 0.54 18.70 7.41 87.66 0.65 19.35 16 13 O -0.60 -26.31 16.79 -3.01 -0.05 -26.36 16 14 C -0.19 -4.51 2.60 -52.20 -0.14 -4.64 16 15 C -0.11 -1.99 10.00 31.44 0.31 -1.67 16 16 C -0.14 -2.90 6.64 -9.22 -0.06 -2.96 16 17 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.09 -1.25 6.64 31.67 0.21 -1.04 16 19 C -0.12 -1.83 6.91 31.89 0.22 -1.61 16 20 C -0.08 -1.43 6.18 31.67 0.20 -1.24 16 21 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 22 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 23 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.41 11.08 7.99 -92.71 -0.74 10.34 16 27 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.24 7.61 -2.39 -0.02 1.22 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.38 283.72 2.64 -70.74 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.28 Total: 15.18 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 2.71 Total: -18.03 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.19 Total: -85.87 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -73.38 2.64 -70.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693226008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.052 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds