Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00019 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99879 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99711 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 C 1.52311 * 115.91387 * 111.38986 * 13 12 11 15 15 C 1.52063 * 115.93007 * 179.67851 * 13 12 11 16 16 H 1.09003 * 117.25770 * 0.63551 * 15 13 12 17 17 C 1.52710 * 120.52134 * 149.26350 * 15 13 12 18 18 C 1.52876 * 110.15448 * 338.52578 * 17 15 13 19 19 C 1.53304 * 108.57864 * 54.52191 * 18 17 15 20 20 C 1.51666 * 108.15075 * 285.45630 * 19 18 17 21 21 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 23 23 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 24 24 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 25 25 H 1.08999 * 117.53777 * 213.90343 * 14 13 12 26 26 H 1.08998 * 117.53819 * 359.07905 * 14 13 12 27 27 H 1.08998 * 109.35918 * 98.74338 * 17 15 13 28 28 H 1.09004 * 109.35634 * 218.32201 * 17 15 13 29 29 H 1.08996 * 109.61867 * 174.25109 * 18 17 15 30 30 H 1.09007 * 109.61991 * 294.61486 * 18 17 15 31 31 H 1.09000 * 109.61263 * 45.29066 * 19 18 17 32 32 H 1.09000 * 109.61358 * 165.64392 * 19 18 17 33 33 H 1.09007 * 109.72021 * 294.55436 * 20 19 18 34 34 H 1.08997 * 108.14958 * 175.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.2106 -6.0793 0.0195 14 6 2.2624 -6.9033 1.2994 15 6 1.6032 -7.4733 0.0340 16 1 0.5155 -7.5440 0.0277 17 6 2.3276 -8.6419 -0.6306 18 6 3.3225 -8.1230 -1.6689 19 6 4.2569 -7.1155 -0.9893 20 6 3.4853 -5.8282 -0.7709 21 1 -0.4850 0.8400 -0.0004 22 1 2.9189 -3.6477 0.0070 23 1 0.5894 -4.9697 0.9028 24 1 0.5900 -4.9786 -0.8771 25 1 3.2273 -7.3157 1.5945 26 1 1.6084 -6.6038 2.1184 27 1 2.8621 -9.2140 0.1277 28 1 1.5985 -9.2876 -1.1201 29 1 3.9059 -8.9545 -2.0642 30 1 2.7830 -7.6356 -2.4812 31 1 4.5915 -7.5150 -0.0319 32 1 5.1194 -6.9273 -1.6287 33 1 3.2302 -5.3845 -1.7333 34 1 4.1230 -5.1401 -0.2159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693550990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -37.846618 kcal Electronic energy + Delta-G solvation = -15311.388593 eV Core-core repulsion = 12822.801190 eV Total energy + Delta-G solvation = -2488.587402 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86062 -36.99035 -33.82096 -32.68172 -32.12656 -30.36959 -27.03501 -24.93494 -24.55572 -21.71703 -20.83644 -19.42333 -18.03239 -17.27707 -15.65650 -15.22604 -14.26997 -14.23962 -14.04296 -13.82306 -13.72731 -13.29705 -12.97649 -12.34677 -11.95644 -11.92047 -11.34803 -11.12485 -11.05489 -10.92757 -10.81864 -10.68533 -10.41790 -10.22178 -10.10401 -9.56846 -9.28722 -8.81047 -7.56157 -7.40550 -6.14401 -4.59641 3.16439 3.22984 3.26578 3.84802 4.14592 4.63614 4.65305 4.79849 4.84673 4.98920 5.17355 5.22630 5.36854 5.41172 5.55372 5.69948 5.72566 5.84359 5.92259 5.94532 5.98652 6.18876 6.24441 6.29572 6.33225 6.38224 6.45472 6.60663 6.67584 7.47088 7.99478 8.17479 8.38516 9.06561 9.60853 10.64983 10.84138 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051920 B = 0.005994 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.157394 B = 4670.182733 C = 4968.098649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.765 5.765 12 C 0.167 3.833 13 C -0.112 4.112 14 C -0.175 4.175 15 C -0.146 4.146 16 H 0.101 0.899 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.081 4.081 21 H 0.267 0.733 22 H 0.380 0.620 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 -13.429 -1.020 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.421 5.421 12 C 0.042 3.958 13 C -0.112 4.112 14 C -0.212 4.212 15 C -0.165 4.165 16 H 0.119 0.881 17 C -0.123 4.123 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.119 4.119 21 H 0.078 0.922 22 H 0.213 0.787 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.855 -13.322 -1.009 15.016 hybrid contribution 0.837 0.795 0.083 1.157 sum 7.692 -12.528 -0.926 14.730 Atomic orbital electron populations 1.70029 1.07058 1.27160 1.35571 1.25706 0.94598 1.00251 0.92644 0.86385 0.80151 0.81479 0.78792 1.19767 1.20486 1.18939 1.20884 0.93533 0.89464 1.54415 0.91512 1.18222 0.87205 0.82514 0.76312 1.90594 1.14153 1.86967 1.54911 1.46143 1.08664 1.04695 1.82607 1.20479 0.92349 0.82607 1.00372 1.21290 0.98082 0.91963 0.99869 1.23256 1.02014 1.04522 0.91424 1.22254 0.99013 0.93997 1.01192 0.88087 1.21022 0.97681 0.95824 0.97795 1.21586 0.97379 0.98602 0.98212 1.21404 0.97816 0.95951 1.00532 1.20537 0.93989 0.97230 1.00135 0.92176 0.78700 0.93379 0.93238 0.89098 0.88915 0.91988 0.91911 0.92389 0.91577 0.92066 0.91872 0.90856 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.53 11.83 55.55 0.66 -22.88 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.75 9.54 -35.63 -0.34 -16.09 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.21 7.75 -12.99 -0.10 16.11 16 10 O -0.58 -19.44 15.02 5.20 0.08 -19.36 16 11 N -0.76 -17.66 5.32 -61.72 -0.33 -17.99 16 12 C 0.17 3.37 5.67 -4.04 -0.02 3.34 16 13 C -0.11 -1.69 2.43 -155.81 -0.38 -2.07 16 14 C -0.18 -2.35 9.24 -26.74 -0.25 -2.60 16 15 C -0.15 -1.90 5.83 -90.91 -0.53 -2.43 16 16 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.09 -0.92 5.83 -26.94 -0.16 -1.07 16 18 C -0.12 -1.26 5.92 -26.64 -0.16 -1.42 16 19 C -0.12 -1.32 5.70 -27.25 -0.16 -1.47 16 20 C -0.08 -1.12 4.31 -27.88 -0.12 -1.24 16 21 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 22 H 0.38 7.77 6.60 -40.82 -0.27 7.50 16 23 H 0.05 1.03 7.77 -51.92 -0.40 0.63 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 1.09 7.26 -51.93 -0.38 0.72 16 26 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 27 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.06 0.65 7.11 -51.93 -0.37 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 LS Contribution 275.64 15.07 4.15 4.15 Total: -1.00 -33.83 275.64 -7.89 -41.72 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.12 Total: 5.50 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.30 Total: -6.54 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.33 Total: -40.87 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.08 Total: -19.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.83 -7.89 -41.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693550990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.875 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds