Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00019 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99879 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99711 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.52999 * 109.47528 * 180.02562 * 12 11 9 14 14 C 1.52311 * 115.91387 * 111.38986 * 13 12 11 15 15 C 1.52063 * 115.93007 * 179.67851 * 13 12 11 16 16 H 1.09003 * 117.25770 * 0.63551 * 15 13 12 17 17 C 1.52710 * 120.52134 * 149.26350 * 15 13 12 18 18 C 1.52876 * 110.15448 * 338.52578 * 17 15 13 19 19 C 1.53304 * 108.57864 * 54.52191 * 18 17 15 20 20 C 1.51666 * 108.15075 * 285.45630 * 19 18 17 21 21 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 23 23 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 24 24 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 25 25 H 1.08999 * 117.53777 * 213.90343 * 14 13 12 26 26 H 1.08998 * 117.53819 * 359.07905 * 14 13 12 27 27 H 1.08998 * 109.35918 * 98.74338 * 17 15 13 28 28 H 1.09004 * 109.35634 * 218.32201 * 17 15 13 29 29 H 1.08996 * 109.61867 * 174.25109 * 18 17 15 30 30 H 1.09007 * 109.61991 * 294.61486 * 18 17 15 31 31 H 1.09000 * 109.61263 * 45.29066 * 19 18 17 32 32 H 1.09000 * 109.61358 * 165.64392 * 19 18 17 33 33 H 1.09007 * 109.72021 * 294.55436 * 20 19 18 34 34 H 1.08997 * 108.14958 * 175.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.2106 -6.0793 0.0195 14 6 2.2624 -6.9033 1.2994 15 6 1.6032 -7.4733 0.0340 16 1 0.5155 -7.5440 0.0277 17 6 2.3276 -8.6419 -0.6306 18 6 3.3225 -8.1230 -1.6689 19 6 4.2569 -7.1155 -0.9893 20 6 3.4853 -5.8282 -0.7709 21 1 -0.4850 0.8400 -0.0004 22 1 2.9189 -3.6477 0.0070 23 1 0.5894 -4.9697 0.9028 24 1 0.5900 -4.9786 -0.8771 25 1 3.2273 -7.3157 1.5945 26 1 1.6084 -6.6038 2.1184 27 1 2.8621 -9.2140 0.1277 28 1 1.5985 -9.2876 -1.1201 29 1 3.9059 -8.9545 -2.0642 30 1 2.7830 -7.6356 -2.4812 31 1 4.5915 -7.5150 -0.0319 32 1 5.1194 -6.9273 -1.6287 33 1 3.2302 -5.3845 -1.7333 34 1 4.1230 -5.1401 -0.2159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693550990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -60.598092 kcal Electronic energy + Delta-G solvation = -15312.375171 eV Core-core repulsion = 12822.801190 eV Total energy + Delta-G solvation = -2489.573980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03716 -39.10955 -35.39580 -34.54503 -33.82331 -31.55442 -29.03603 -26.74176 -25.57264 -22.75146 -22.24265 -21.24561 -19.44329 -18.96251 -17.52017 -16.89804 -15.97920 -15.84018 -15.45608 -15.10136 -14.80946 -14.60600 -14.35633 -14.10999 -13.63848 -13.09824 -13.03001 -12.79756 -12.64770 -12.58066 -12.15955 -12.01731 -11.80636 -11.65576 -11.15799 -10.94639 -10.66944 -10.44205 -9.88172 -9.47417 -8.30356 -6.87522 1.39687 1.41756 1.57262 2.24281 2.45489 2.69635 3.17490 3.59861 3.63658 3.85394 3.86752 3.94572 4.18067 4.34551 4.41204 4.56021 4.65494 4.71916 4.82956 4.85146 4.93616 5.03874 5.06808 5.25646 5.29277 5.30350 5.35001 5.38010 5.46320 5.55236 5.85948 6.21968 6.26567 6.84992 7.54095 8.47521 8.66168 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051920 B = 0.005994 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.157394 B = 4670.182733 C = 4968.098649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.750 5.750 12 C 0.170 3.830 13 C -0.127 4.127 14 C -0.165 4.165 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.083 4.083 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.079 4.079 21 H 0.275 0.725 22 H 0.395 0.605 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 -14.098 -0.979 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.405 5.405 12 C 0.045 3.955 13 C -0.127 4.127 14 C -0.202 4.202 15 C -0.154 4.154 16 H 0.111 0.889 17 C -0.120 4.120 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.117 4.117 21 H 0.085 0.915 22 H 0.230 0.770 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.133 0.867 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.560 -14.045 -0.970 17.018 hybrid contribution -0.046 0.947 0.072 0.951 sum 9.514 -13.098 -0.897 16.213 Atomic orbital electron populations 1.70203 1.09664 1.28993 1.36478 1.27033 0.95544 1.05104 0.91107 0.84972 0.78737 0.74779 0.79490 1.18496 1.19734 1.17092 1.21433 0.94741 0.90028 1.54798 0.89374 1.18701 0.86869 0.84515 0.76112 1.90543 1.16357 1.88095 1.57441 1.45820 1.09362 1.04426 1.80893 1.20488 0.93332 0.83438 0.98216 1.21131 0.97985 0.91048 1.02581 1.23320 1.02990 1.03237 0.90610 1.22378 0.99018 0.93272 1.00746 0.88886 1.21073 0.97968 0.94723 0.98249 1.21595 0.97341 0.99123 0.97687 1.21386 0.97838 0.94275 1.01576 1.20517 0.93402 0.99023 0.98761 0.91538 0.76978 0.95423 0.95619 0.86669 0.89932 0.90139 0.90784 0.90003 0.92994 0.90824 0.90472 0.92681 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.80 11.83 21.84 0.26 -51.54 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.57 -33.50 9.54 24.83 0.24 -33.26 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.53 32.46 7.75 86.36 0.67 33.13 16 10 O -0.64 -44.70 15.02 -4.33 -0.06 -44.77 16 11 N -0.75 -35.81 5.32 -467.41 -2.49 -38.30 16 12 C 0.17 7.20 5.67 86.38 0.49 7.69 16 13 C -0.13 -3.82 2.43 -53.02 -0.13 -3.95 16 14 C -0.16 -4.17 9.24 30.59 0.28 -3.89 16 15 C -0.14 -3.35 5.83 -10.98 -0.06 -3.42 16 16 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 17 C -0.08 -1.51 5.83 30.46 0.18 -1.34 16 18 C -0.12 -2.16 5.92 30.65 0.18 -1.98 16 19 C -0.11 -2.16 5.70 30.26 0.17 -1.99 16 20 C -0.08 -2.09 4.31 29.85 0.13 -1.97 16 21 H 0.27 15.58 8.29 -92.71 -0.77 14.81 16 22 H 0.40 16.34 6.60 -92.71 -0.61 15.73 16 23 H 0.03 1.26 7.77 -2.38 -0.02 1.24 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.12 2.38 7.26 -2.39 -0.02 2.37 16 26 H 0.08 2.26 7.94 -2.39 -0.02 2.25 16 27 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.09 8.03 -2.38 -0.02 1.07 16 31 H 0.07 1.26 7.11 -2.39 -0.02 1.24 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 34 H 0.06 1.67 7.13 -2.39 -0.02 1.65 16 Total: -1.00 -76.43 275.64 2.82 -73.61 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.47 Total: 26.36 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 2.61 Total: -8.97 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -2.23 Total: -89.84 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.06 Total: -44.77 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -76.43 2.82 -73.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693550990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.010 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds