Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48501 * 109.47316 * 270.00351 * 3 2 1 5 5 H 1.48499 * 109.46965 * 30.00426 * 3 2 1 6 6 H 1.48505 * 109.47346 * 150.00135 * 3 2 1 7 7 C 1.37882 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00178 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99600 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00444 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00015 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.36040 * 60.27293 * 13 11 10 15 15 C 1.53191 * 109.21769 * 300.75470 * 13 11 10 16 16 C 1.53301 * 108.42152 * 185.46464 * 15 13 11 17 17 C 1.52870 * 108.73870 * 74.30400 * 16 15 13 18 18 C 1.52078 * 110.51627 * 305.01908 * 17 16 15 19 19 H 1.08993 * 114.64119 * 165.63080 * 18 17 16 20 20 C 1.52304 * 119.83568 * 310.45023 * 18 17 16 21 21 C 1.52069 * 120.01774 * 21.70085 * 18 17 16 22 22 H 1.08997 * 117.25658 * 143.33754 * 21 18 17 23 23 H 0.96994 * 119.99859 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46931 * 60.00154 * 9 7 2 25 25 H 1.08995 * 109.47632 * 300.00224 * 9 7 2 26 26 H 0.96995 * 120.00421 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.88664 * 65.66963 * 15 13 11 28 28 H 1.09004 * 109.50709 * 305.03040 * 15 13 11 29 29 H 1.09002 * 109.61781 * 314.48032 * 16 15 13 30 30 H 1.08998 * 109.61503 * 194.12173 * 16 15 13 31 31 H 1.08995 * 109.27150 * 65.28940 * 17 16 15 32 32 H 1.09004 * 109.26589 * 184.75498 * 17 16 15 33 33 H 1.09006 * 117.53539 * 217.19314 * 20 18 17 34 34 H 1.09000 * 117.53917 * 2.37045 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8273 -4.2423 -0.0014 14 1 5.4671 -4.7526 -0.8947 15 6 5.2979 -4.9647 1.2414 16 6 5.9283 -6.3611 1.2953 17 6 7.3876 -6.2247 1.7296 18 6 8.1288 -5.2637 0.8132 19 1 9.0922 -4.9247 1.1938 20 6 8.0312 -5.4301 -0.6976 21 6 7.3545 -4.2392 -0.0013 22 1 7.8116 -3.2588 -0.1347 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8746 -0.6800 -0.8910 26 1 3.3696 -3.3125 -0.0002 27 1 4.2131 -5.0547 1.1840 28 1 5.5744 -4.4036 2.1341 29 1 5.8816 -6.8221 0.3087 30 1 5.3889 -6.9785 2.0136 31 1 7.4251 -5.8480 2.7517 32 1 7.8677 -7.2025 1.6895 33 1 8.9264 -5.2276 -1.2858 34 1 7.3889 -6.2250 -1.0766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694238486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -36.525729 kcal Electronic energy + Delta-G solvation = -15248.471885 eV Core-core repulsion = 12759.941760 eV Total energy + Delta-G solvation = -2488.530124 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13577 -38.06807 -34.33328 -33.17717 -32.27394 -31.07538 -27.81095 -25.19723 -22.65736 -22.40147 -21.07006 -19.84676 -18.38314 -17.53661 -16.40280 -15.52330 -15.13734 -14.61096 -14.35209 -14.00376 -13.71839 -13.41536 -13.10544 -12.67143 -12.35280 -12.23167 -11.75273 -11.47822 -11.23998 -11.03143 -10.94889 -10.75512 -10.31095 -9.96470 -9.85743 -9.63716 -9.48322 -9.07183 -8.77230 -8.12534 -6.21191 -4.23247 3.24365 3.28028 3.33681 3.42449 3.79168 3.96770 4.33900 4.57721 4.74175 4.86603 4.98744 5.07748 5.14136 5.19027 5.38892 5.43352 5.49447 5.62461 5.74558 5.78346 5.92338 6.00858 6.07365 6.12541 6.26232 6.29717 6.46575 6.83116 7.08505 7.25250 7.40977 8.14968 8.53897 8.75923 8.96495 9.39315 10.90811 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051570 B = 0.006054 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.817602 B = 4623.903696 C = 4946.584692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.705 5.705 11 C 0.506 3.494 12 O -0.558 6.558 13 C -0.076 4.076 14 H 0.095 0.905 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.088 4.088 18 C -0.141 4.141 19 H 0.096 0.904 20 C -0.184 4.184 21 C -0.131 4.131 22 H 0.122 0.878 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.396 0.604 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.562 -12.788 1.557 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.353 5.353 11 C 0.291 3.709 12 O -0.438 6.438 13 C -0.098 4.098 14 H 0.113 0.887 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.125 4.125 18 C -0.160 4.160 19 H 0.115 0.885 20 C -0.221 4.221 21 C -0.150 4.150 22 H 0.140 0.860 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.230 0.770 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.925 -11.976 1.554 17.688 hybrid contribution -0.008 0.602 -0.101 0.611 sum 12.917 -11.374 1.453 17.272 Atomic orbital electron populations 1.69880 1.06208 1.27411 1.49518 1.24797 0.94783 0.99164 0.93869 0.86818 0.80580 0.83249 0.79052 1.19849 1.20896 1.18526 1.21100 0.88549 0.95209 1.53231 0.90265 1.19487 0.95218 0.78849 0.96721 1.46170 1.05736 1.10920 1.72440 1.20426 0.83031 0.90718 0.76738 1.90606 1.55512 1.46377 1.51274 1.20832 0.94511 0.94246 1.00190 0.88742 1.21626 1.00219 0.95678 0.97364 1.21601 0.95612 0.96791 1.01735 1.20848 0.94937 0.98217 0.98547 1.21831 1.00490 1.00800 0.92838 0.88548 1.23117 1.03181 1.01044 0.94719 1.22134 0.92876 0.95748 1.04199 0.86005 0.92273 0.95763 0.96221 0.77031 0.90879 0.91063 0.91727 0.91449 0.91486 0.91742 0.89115 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.48 4.50 -5.20 -0.02 5.46 16 10 N -0.70 -14.48 5.44 -61.48 -0.33 -14.82 16 11 C 0.51 9.82 7.15 -10.99 -0.08 9.75 16 12 O -0.56 -12.92 15.30 5.56 0.09 -12.84 16 13 C -0.08 -1.09 2.47 -91.82 -0.23 -1.32 16 14 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 15 C -0.11 -1.37 5.06 -26.48 -0.13 -1.50 16 16 C -0.12 -1.18 5.69 -26.64 -0.15 -1.33 16 17 C -0.09 -0.85 5.94 -27.27 -0.16 -1.02 16 18 C -0.14 -1.58 6.00 -91.92 -0.55 -2.13 16 19 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.18 -2.01 9.66 -26.75 -0.26 -2.26 16 21 C -0.13 -1.80 5.51 -90.90 -0.50 -2.31 16 22 H 0.12 1.98 6.74 -51.93 -0.35 1.63 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 26 H 0.40 7.17 7.80 -40.82 -0.32 6.85 16 27 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 28 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 29 H 0.06 0.60 7.11 -51.93 -0.37 0.23 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.93 7.26 -51.93 -0.38 0.56 16 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -31.36 274.54 -7.64 -39.00 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.11 Total: 3.29 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.52 Total: -9.89 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.44 Total: -40.66 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.36 -7.64 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694238486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.475 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds