Wall clock time and date at job start Mon Mar 30 2020 02:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48501 * 109.47316 * 270.00351 * 3 2 1 5 5 H 1.48499 * 109.46965 * 30.00426 * 3 2 1 6 6 H 1.48505 * 109.47346 * 150.00135 * 3 2 1 7 7 C 1.37882 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00178 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99600 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00444 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00015 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.36040 * 60.27293 * 13 11 10 15 15 C 1.53191 * 109.21769 * 300.75470 * 13 11 10 16 16 C 1.53301 * 108.42152 * 185.46464 * 15 13 11 17 17 C 1.52870 * 108.73870 * 74.30400 * 16 15 13 18 18 C 1.52078 * 110.51627 * 305.01908 * 17 16 15 19 19 H 1.08993 * 114.64119 * 165.63080 * 18 17 16 20 20 C 1.52304 * 119.83568 * 310.45023 * 18 17 16 21 21 C 1.52069 * 120.01774 * 21.70085 * 18 17 16 22 22 H 1.08997 * 117.25658 * 143.33754 * 21 18 17 23 23 H 0.96994 * 119.99859 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46931 * 60.00154 * 9 7 2 25 25 H 1.08995 * 109.47632 * 300.00224 * 9 7 2 26 26 H 0.96995 * 120.00421 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.88664 * 65.66963 * 15 13 11 28 28 H 1.09004 * 109.50709 * 305.03040 * 15 13 11 29 29 H 1.09002 * 109.61781 * 314.48032 * 16 15 13 30 30 H 1.08998 * 109.61503 * 194.12173 * 16 15 13 31 31 H 1.08995 * 109.27150 * 65.28940 * 17 16 15 32 32 H 1.09004 * 109.26589 * 184.75498 * 17 16 15 33 33 H 1.09006 * 117.53539 * 217.19314 * 20 18 17 34 34 H 1.09000 * 117.53917 * 2.37045 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8273 -4.2423 -0.0014 14 1 5.4671 -4.7526 -0.8947 15 6 5.2979 -4.9647 1.2414 16 6 5.9283 -6.3611 1.2953 17 6 7.3876 -6.2247 1.7296 18 6 8.1288 -5.2637 0.8132 19 1 9.0922 -4.9247 1.1938 20 6 8.0312 -5.4301 -0.6976 21 6 7.3545 -4.2392 -0.0013 22 1 7.8116 -3.2588 -0.1347 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8746 -0.6800 -0.8910 26 1 3.3696 -3.3125 -0.0002 27 1 4.2131 -5.0547 1.1840 28 1 5.5744 -4.4036 2.1341 29 1 5.8816 -6.8221 0.3087 30 1 5.3889 -6.9785 2.0136 31 1 7.4251 -5.8480 2.7517 32 1 7.8677 -7.2025 1.6895 33 1 8.9264 -5.2276 -1.2858 34 1 7.3889 -6.2250 -1.0766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694238486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:25 Heat of formation + Delta-G solvation = -57.093643 kcal Electronic energy + Delta-G solvation = -15249.363776 eV Core-core repulsion = 12759.941760 eV Total energy + Delta-G solvation = -2489.422016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36916 -39.42332 -36.20514 -34.60056 -33.87146 -32.20416 -29.72416 -26.25499 -24.23441 -23.55982 -22.33126 -21.33183 -19.39502 -19.20124 -18.07606 -17.05062 -16.74493 -16.23814 -15.69460 -15.24038 -14.85689 -14.76222 -14.51938 -14.23927 -13.99007 -13.58591 -13.08205 -12.89620 -12.70459 -12.42384 -12.11918 -11.95860 -11.83119 -11.67718 -11.24514 -10.93770 -10.82440 -10.63283 -10.52129 -9.94640 -8.41840 -6.48757 1.30538 1.32836 1.45468 1.70674 2.26167 2.43844 2.86874 2.93456 3.63261 3.72269 3.85364 4.02772 4.22299 4.26775 4.34399 4.46343 4.52436 4.65475 4.79895 4.89150 4.94062 4.99819 5.07082 5.19200 5.22046 5.24370 5.28738 5.37369 5.42311 5.47258 5.54136 6.07209 6.51912 6.82662 7.13905 7.39161 8.72896 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051570 B = 0.006054 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.817602 B = 4623.903696 C = 4946.584692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.704 5.704 11 C 0.503 3.497 12 O -0.599 6.599 13 C -0.063 4.063 14 H 0.115 0.885 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.132 4.132 19 H 0.099 0.901 20 C -0.164 4.164 21 C -0.165 4.165 22 H 0.088 0.912 23 H 0.273 0.727 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.408 0.592 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.641 -14.432 1.555 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.353 5.353 11 C 0.290 3.710 12 O -0.481 6.481 13 C -0.084 4.084 14 H 0.133 0.867 15 C -0.149 4.149 16 C -0.151 4.151 17 C -0.126 4.126 18 C -0.150 4.150 19 H 0.117 0.883 20 C -0.201 4.201 21 C -0.183 4.183 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.244 0.756 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.002 -13.655 1.552 19.620 hybrid contribution -0.335 1.078 -0.101 1.134 sum 13.667 -12.577 1.451 18.630 Atomic orbital electron populations 1.69973 1.07609 1.28633 1.50625 1.25577 0.95532 1.02572 0.93556 0.85879 0.79179 0.79486 0.79471 1.18950 1.19598 1.18799 1.21280 0.89821 0.94655 1.52689 0.92129 1.19093 0.93497 0.81251 0.95464 1.46037 1.06787 1.09580 1.72901 1.21401 0.81920 0.92753 0.74885 1.90584 1.56341 1.48360 1.52768 1.20836 0.94984 0.90450 1.02116 0.86734 1.21661 1.00737 0.97040 0.95426 1.21595 0.95509 0.94941 1.03059 1.20906 0.94854 0.98833 0.97980 1.21969 1.00063 0.99501 0.93507 0.88316 1.23213 1.02965 0.99157 0.94730 1.21986 0.92444 0.95544 1.08345 0.89365 0.91791 0.97213 0.97265 0.75581 0.90370 0.92725 0.90478 0.89690 0.91597 0.89422 0.88342 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 2 C 0.03 1.61 5.47 84.66 0.46 2.07 16 3 Si 0.94 44.72 27.47 68.60 1.88 46.60 16 4 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.61 6.54 99.48 0.65 -11.96 16 7 C -0.55 -30.59 9.83 25.60 0.25 -30.34 16 8 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 9 C 0.23 11.65 4.50 85.63 0.38 12.04 16 10 N -0.70 -29.05 5.44 -466.80 -2.54 -31.59 16 11 C 0.50 19.61 7.15 87.66 0.63 20.24 16 12 O -0.60 -28.39 15.30 -3.03 -0.05 -28.44 16 13 C -0.06 -1.72 2.47 -11.57 -0.03 -1.75 16 14 H 0.11 2.67 8.06 -2.39 -0.02 2.65 16 15 C -0.11 -2.52 5.06 30.76 0.16 -2.37 16 16 C -0.11 -1.83 5.69 30.65 0.17 -1.65 16 17 C -0.09 -1.42 5.94 30.25 0.18 -1.24 16 18 C -0.13 -2.64 6.00 -11.64 -0.07 -2.71 16 19 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.16 -3.12 9.66 30.58 0.30 -2.82 16 21 C -0.16 -4.37 5.51 -10.98 -0.06 -4.43 16 22 H 0.09 2.96 6.74 -2.39 -0.02 2.94 16 23 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 25 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 26 H 0.41 14.68 7.80 -92.71 -0.72 13.96 16 27 H 0.08 1.68 7.69 -2.39 -0.02 1.67 16 28 H 0.05 1.42 8.05 -2.39 -0.02 1.40 16 29 H 0.08 1.09 7.11 -2.39 -0.02 1.07 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 33 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.11 1.74 7.26 -2.39 -0.02 1.73 16 Total: -1.00 -68.07 274.54 2.28 -65.79 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.31 Total: 16.09 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 2.37 Total: -12.96 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.24 Total: -87.09 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -68.07 2.28 -65.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694238486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.699 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds