Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34506 * 125.79115 * 2 1 4 4 C 1.41384 * 106.84648 * 180.02562 * 3 2 1 5 5 C 1.34521 * 106.83504 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.78562 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47548 * 89.99747 * 6 5 4 8 8 C 1.46901 * 111.00370 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47228 * 325.00303 * 8 7 6 10 10 C 1.52999 * 109.47083 * 84.99725 * 8 7 6 11 11 C 1.53002 * 109.47363 * 205.00101 * 8 7 6 12 12 C 1.50696 * 109.46919 * 64.99807 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47364 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46883 * 120.00040 * 16 14 12 19 19 H 1.48497 * 109.46870 * 239.99850 * 16 14 12 20 20 O 1.34301 * 108.41847 * 0.26029 * 5 4 3 21 21 H 1.09002 * 109.47334 * 90.00139 * 1 2 3 22 22 H 1.09001 * 109.47102 * 209.99349 * 1 2 3 23 23 H 1.08998 * 109.47259 * 329.99713 * 1 2 3 24 24 H 1.08007 * 126.58110 * 0.05966 * 3 2 1 25 25 H 1.07998 * 126.58220 * 179.97438 * 4 3 2 26 26 H 1.09006 * 109.47368 * 329.99474 * 6 5 4 27 27 H 1.08998 * 109.47071 * 209.99765 * 6 5 4 28 28 H 1.00901 * 110.99861 * 56.04541 * 7 6 5 29 29 H 1.09005 * 109.47098 * 60.00172 * 10 8 7 30 30 H 1.08999 * 109.47143 * 179.97438 * 10 8 7 31 31 H 1.09001 * 109.47337 * 300.00592 * 10 8 7 32 32 H 1.09000 * 109.46497 * 305.00072 * 11 8 7 33 33 H 1.08999 * 109.46623 * 185.00136 * 11 8 7 34 34 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7705 -1.6378 -0.0019 7 7 5.1567 -1.9395 1.3829 8 6 6.3152 -2.8420 1.4218 9 1 6.2573 -3.5436 0.5896 10 6 7.6031 -2.0237 1.3102 11 6 6.3151 -3.6156 2.7419 12 6 5.1071 -4.5148 2.7970 13 1 4.4090 -4.5325 1.9732 14 6 4.8926 -5.3142 3.8998 15 7 5.7393 -5.2878 4.9057 16 14 3.3948 -6.4284 3.9684 17 1 2.6010 -6.2680 2.7237 18 1 3.8343 -7.8411 4.0974 19 1 2.5582 -6.0614 5.1392 20 8 2.2924 -1.0894 -0.0073 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.9666 2.1204 0.0009 25 1 4.5212 1.2433 -0.0012 26 1 5.6041 -1.1584 -0.5153 27 1 4.5107 -2.5630 -0.5163 28 1 4.3804 -2.3258 1.8988 29 1 7.6611 -1.3221 2.1424 30 1 8.4627 -2.6933 1.3395 31 1 7.6032 -1.4726 0.3698 32 1 6.2834 -2.9129 3.5746 33 1 7.2205 -4.2186 2.8095 34 1 6.5169 -4.7090 4.8702 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695858669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -8.315191 kcal Electronic energy + Delta-G solvation = -15009.750102 eV Core-core repulsion = 12522.443279 eV Total energy + Delta-G solvation = -2487.306823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.36758 -36.84722 -33.40012 -32.99342 -32.10668 -30.28696 -27.17779 -26.74688 -23.61988 -22.71318 -21.54539 -19.96845 -19.70602 -16.84225 -16.30220 -16.06138 -15.23203 -14.53189 -14.27422 -13.73591 -13.33670 -13.11783 -12.99980 -12.63308 -12.48208 -12.22506 -12.15023 -11.72286 -11.35636 -11.23816 -10.88097 -10.80635 -10.50257 -10.14322 -9.69996 -9.56701 -8.56582 -8.35326 -8.12868 -7.79170 -6.38025 -4.07822 1.88451 2.79211 3.08299 3.43036 3.46737 3.59765 4.52816 4.73736 4.96369 5.08619 5.20881 5.30050 5.39208 5.42506 5.62833 5.63688 5.73301 5.84593 5.98253 6.06213 6.15636 6.19482 6.34076 6.39144 6.72288 6.74545 6.78927 7.23781 7.37120 7.40608 7.82342 8.08411 8.17294 8.42851 8.86356 9.64562 11.02820 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.007503 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.390134 B = 3730.858080 C = 4725.154447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.214 4.214 4 C -0.197 4.197 5 C 0.002 3.998 6 C 0.137 3.863 7 N -0.678 5.678 8 C 0.094 3.906 9 H 0.033 0.967 10 C -0.137 4.137 11 C 0.006 3.994 12 C -0.605 4.605 13 H 0.046 0.954 14 C 0.018 3.982 15 N -0.911 5.911 16 Si 1.071 2.929 17 H -0.290 1.290 18 H -0.287 1.287 19 H -0.286 1.286 20 O -0.174 6.174 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.094 0.906 27 H 0.041 0.959 28 H 0.360 0.640 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 10.439 -10.629 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.233 4.233 4 C -0.217 4.217 5 C -0.049 4.049 6 C 0.008 3.992 7 N -0.313 5.313 8 C -0.015 4.015 9 H 0.051 0.949 10 C -0.195 4.195 11 C -0.031 4.031 12 C -0.643 4.643 13 H 0.065 0.935 14 C -0.186 4.186 15 N -0.547 5.547 16 Si 0.900 3.100 17 H -0.216 1.216 18 H -0.213 1.213 19 H -0.213 1.213 20 O -0.071 6.071 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.161 0.839 25 H 0.163 0.837 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.181 0.819 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.649 9.581 -9.614 15.113 hybrid contribution 0.484 0.549 -1.210 1.415 sum -6.164 10.130 -10.824 16.055 Atomic orbital electron populations 1.20258 0.85484 1.03955 1.03092 1.22374 0.93928 0.84384 1.06621 1.21513 0.92905 0.99040 1.09886 1.21482 0.97840 0.93848 1.08575 1.22466 0.82619 0.94804 1.04991 1.20388 0.90154 0.95489 0.93146 1.60683 1.10964 1.49768 1.09877 1.21506 0.88859 0.91325 0.99850 0.94854 1.21828 0.97190 0.99853 1.00658 1.19414 0.97386 0.94572 0.91717 1.22043 1.09755 1.26555 1.05989 0.93543 1.25793 1.02363 0.98014 0.92457 1.70712 1.13242 1.38775 1.31962 0.83513 0.74982 0.76033 0.75479 1.21603 1.21339 1.21279 1.83980 1.16638 1.35068 1.71387 0.90480 0.90560 0.89593 0.83872 0.83674 0.88815 0.94080 0.81886 0.92546 0.93153 0.94189 0.96401 0.96786 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.42 36.01 0.38 -0.32 16 2 C -0.02 -0.32 7.32 -35.63 -0.26 -0.59 16 3 C -0.21 -2.96 10.81 -39.70 -0.43 -3.39 16 4 C -0.20 -3.00 10.81 -39.70 -0.43 -3.43 16 5 C 0.00 0.03 6.83 -35.63 -0.24 -0.22 16 6 C 0.14 2.33 6.01 -4.98 -0.03 2.30 16 7 N -0.68 -13.62 6.30 -107.99 -0.68 -14.30 16 8 C 0.09 1.96 2.59 -67.71 -0.18 1.79 16 9 H 0.03 0.71 7.80 -51.93 -0.40 0.31 16 10 C -0.14 -2.43 9.41 37.16 0.35 -2.08 16 11 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 12 C -0.61 -17.02 8.12 -34.44 -0.28 -17.30 16 13 H 0.05 1.30 7.49 -52.49 -0.39 0.91 16 14 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 15 N -0.91 -27.97 13.65 55.43 0.76 -27.22 16 16 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 O -0.17 -3.02 10.65 5.72 0.06 -2.96 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 25 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 26 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 27 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 28 H 0.36 8.12 7.20 -39.29 -0.28 7.84 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.61 7.45 -51.93 -0.39 0.23 16 32 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 33 H 0.01 0.37 8.01 -51.93 -0.42 -0.04 16 34 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 LS Contribution 288.99 15.07 4.35 4.35 Total: -1.00 -31.10 288.99 -7.07 -38.18 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.15 Total: 4.13 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.33 Total: -22.76 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.08 Total: -41.51 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.10 -7.07 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695858669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.860 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds