Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34506 * 125.79115 * 2 1 4 4 C 1.41384 * 106.84648 * 180.02562 * 3 2 1 5 5 C 1.34521 * 106.83504 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.78562 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47548 * 89.99747 * 6 5 4 8 8 C 1.46901 * 111.00370 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47228 * 325.00303 * 8 7 6 10 10 C 1.52999 * 109.47083 * 84.99725 * 8 7 6 11 11 C 1.53002 * 109.47363 * 205.00101 * 8 7 6 12 12 C 1.50696 * 109.46919 * 64.99807 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47364 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46883 * 120.00040 * 16 14 12 19 19 H 1.48497 * 109.46870 * 239.99850 * 16 14 12 20 20 O 1.34301 * 108.41847 * 0.26029 * 5 4 3 21 21 H 1.09002 * 109.47334 * 90.00139 * 1 2 3 22 22 H 1.09001 * 109.47102 * 209.99349 * 1 2 3 23 23 H 1.08998 * 109.47259 * 329.99713 * 1 2 3 24 24 H 1.08007 * 126.58110 * 0.05966 * 3 2 1 25 25 H 1.07998 * 126.58220 * 179.97438 * 4 3 2 26 26 H 1.09006 * 109.47368 * 329.99474 * 6 5 4 27 27 H 1.08998 * 109.47071 * 209.99765 * 6 5 4 28 28 H 1.00901 * 110.99861 * 56.04541 * 7 6 5 29 29 H 1.09005 * 109.47098 * 60.00172 * 10 8 7 30 30 H 1.08999 * 109.47143 * 179.97438 * 10 8 7 31 31 H 1.09001 * 109.47337 * 300.00592 * 10 8 7 32 32 H 1.09000 * 109.46497 * 305.00072 * 11 8 7 33 33 H 1.08999 * 109.46623 * 185.00136 * 11 8 7 34 34 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7705 -1.6378 -0.0019 7 7 5.1567 -1.9395 1.3829 8 6 6.3152 -2.8420 1.4218 9 1 6.2573 -3.5436 0.5896 10 6 7.6031 -2.0237 1.3102 11 6 6.3151 -3.6156 2.7419 12 6 5.1071 -4.5148 2.7970 13 1 4.4090 -4.5325 1.9732 14 6 4.8926 -5.3142 3.8998 15 7 5.7393 -5.2878 4.9057 16 14 3.3948 -6.4284 3.9684 17 1 2.6010 -6.2680 2.7237 18 1 3.8343 -7.8411 4.0974 19 1 2.5582 -6.0614 5.1392 20 8 2.2924 -1.0894 -0.0073 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.9666 2.1204 0.0009 25 1 4.5212 1.2433 -0.0012 26 1 5.6041 -1.1584 -0.5153 27 1 4.5107 -2.5630 -0.5163 28 1 4.3804 -2.3258 1.8988 29 1 7.6611 -1.3221 2.1424 30 1 8.4627 -2.6933 1.3395 31 1 7.6032 -1.4726 0.3698 32 1 6.2834 -2.9129 3.5746 33 1 7.2205 -4.2186 2.8095 34 1 6.5169 -4.7090 4.8702 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695858669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -28.155542 kcal Electronic energy + Delta-G solvation = -15010.610444 eV Core-core repulsion = 12522.443279 eV Total energy + Delta-G solvation = -2488.167166 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.52225 -38.51282 -35.34466 -34.10635 -33.57010 -31.60120 -28.98787 -28.09087 -25.25466 -24.42803 -22.69864 -21.45079 -21.08364 -18.96056 -17.60767 -17.29714 -16.76825 -16.07557 -15.68491 -15.45853 -15.01720 -14.33638 -14.10582 -13.76893 -13.72096 -13.50390 -13.45774 -13.31299 -13.02324 -12.76590 -12.57172 -12.41416 -12.33489 -11.98608 -11.44960 -10.80918 -10.67781 -10.58183 -9.46523 -9.18888 -8.70493 -6.40597 0.72543 1.48470 1.57687 1.67757 1.73535 1.99581 2.52339 3.11368 3.41446 3.72623 3.97616 4.12869 4.15190 4.29203 4.41102 4.50150 4.57317 4.60939 4.71019 4.85438 4.89727 4.90870 5.05210 5.11142 5.12879 5.23479 5.29218 5.40858 5.67546 5.93029 6.15334 6.17096 6.23661 6.35890 6.56714 7.40136 8.70560 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023032 B = 0.007503 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.390134 B = 3730.858080 C = 4725.154447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 C -0.222 4.222 4 C -0.193 4.193 5 C -0.034 4.034 6 C 0.142 3.858 7 N -0.680 5.680 8 C 0.100 3.900 9 H 0.029 0.971 10 C -0.129 4.129 11 C 0.010 3.990 12 C -0.611 4.611 13 H 0.045 0.955 14 C -0.035 4.035 15 N -0.936 5.936 16 Si 1.118 2.882 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.279 1.279 20 O -0.202 6.202 21 H 0.097 0.903 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.173 0.827 25 H 0.161 0.839 26 H 0.118 0.882 27 H 0.034 0.966 28 H 0.341 0.659 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.069 0.931 32 H -0.006 1.006 33 H -0.003 1.003 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 11.532 -11.868 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.241 4.241 4 C -0.213 4.213 5 C -0.083 4.083 6 C 0.014 3.986 7 N -0.313 5.313 8 C -0.010 4.010 9 H 0.047 0.953 10 C -0.187 4.187 11 C -0.027 4.027 12 C -0.649 4.649 13 H 0.063 0.937 14 C -0.233 4.233 15 N -0.574 5.574 16 Si 0.940 3.060 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.204 1.204 20 O -0.100 6.100 21 H 0.115 0.885 22 H 0.092 0.908 23 H 0.129 0.871 24 H 0.191 0.809 25 H 0.179 0.821 26 H 0.136 0.864 27 H 0.052 0.948 28 H 0.160 0.840 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.852 10.698 -10.878 17.158 hybrid contribution 0.838 0.286 -0.862 1.235 sum -7.014 10.984 -11.739 17.540 Atomic orbital electron populations 1.20485 0.82535 1.05035 1.04713 1.23313 0.95717 0.83849 1.05138 1.21906 0.92153 1.00427 1.09598 1.21824 0.99256 0.93383 1.06834 1.22470 0.82607 0.95438 1.07825 1.20411 0.91457 0.95631 0.91132 1.60748 1.09927 1.48710 1.11886 1.21384 0.91089 0.91752 0.96748 0.95260 1.21740 0.95320 0.99581 1.02013 1.19324 0.95729 0.94043 0.93647 1.22369 1.10303 1.26496 1.05717 0.93717 1.27295 1.04454 0.99446 0.92148 1.70846 1.13754 1.39651 1.33103 0.82911 0.72011 0.74690 0.76373 1.19917 1.20246 1.20449 1.83957 1.17176 1.36773 1.72107 0.88485 0.90817 0.87127 0.80910 0.82114 0.86442 0.94818 0.84025 0.93074 0.92448 0.91221 0.98751 0.98467 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.42 71.24 0.74 -0.48 16 2 C -0.03 -0.81 7.32 24.83 0.18 -0.63 16 3 C -0.22 -5.60 10.81 22.19 0.24 -5.37 16 4 C -0.19 -5.53 10.81 22.19 0.24 -5.29 16 5 C -0.03 -1.12 6.83 24.83 0.17 -0.95 16 6 C 0.14 4.72 6.01 85.56 0.51 5.24 16 7 N -0.68 -27.29 6.30 -495.58 -3.12 -30.41 16 8 C 0.10 4.17 2.59 44.92 0.12 4.29 16 9 H 0.03 1.25 7.80 -2.39 -0.02 1.23 16 10 C -0.13 -4.38 9.41 71.98 0.68 -3.70 16 11 C 0.01 0.52 3.88 29.85 0.12 0.63 16 12 C -0.61 -34.97 8.12 25.60 0.21 -34.76 16 13 H 0.04 2.53 7.49 -2.91 -0.02 2.50 16 14 C -0.04 -2.08 5.46 84.66 0.46 -1.62 16 15 N -0.94 -58.67 13.65 21.45 0.29 -58.38 16 16 Si 1.12 51.52 29.90 68.60 2.05 53.58 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 O -0.20 -6.93 10.65 -2.45 -0.03 -6.96 16 21 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 25 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 26 H 0.12 3.26 7.44 -2.38 -0.02 3.24 16 27 H 0.03 1.16 8.05 -2.39 -0.02 1.14 16 28 H 0.34 15.72 7.20 -89.69 -0.65 15.07 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.96 7.45 -2.39 -0.02 1.94 16 32 H -0.01 -0.33 8.00 -2.39 -0.02 -0.35 16 33 H 0.00 -0.16 8.01 -2.39 -0.02 -0.18 16 34 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 Total: -1.00 -67.81 288.99 3.39 -64.41 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.53 Total: 20.39 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 3.67 Total: -42.63 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.83 Total: -88.79 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.03 Total: -6.96 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.58 kcal Total: -67.81 3.39 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695858669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.258 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds