Wall clock time and date at job start Mon Mar 30 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41385 * 126.57840 * 2 1 4 4 C 1.34519 * 106.83742 * 179.97438 * 3 2 1 5 5 O 1.34294 * 108.42059 * 359.73663 * 4 3 2 6 6 C 1.34306 * 109.47894 * 0.43760 * 5 4 3 7 7 C 1.50697 * 125.78837 * 179.82759 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.68978 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.52996 * 109.46819 * 205.00022 * 9 8 7 13 13 C 1.50704 * 109.47341 * 65.00385 * 12 9 8 14 14 H 1.08005 * 119.99728 * 359.97438 * 13 12 9 15 15 C 1.37872 * 119.99972 * 179.97438 * 13 12 9 16 16 N 1.31512 * 120.00363 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99722 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47306 * 120.00511 * 17 15 13 20 20 H 1.48502 * 109.47079 * 240.00240 * 17 15 13 21 21 H 1.09001 * 109.47021 * 270.04573 * 1 2 3 22 22 H 1.08998 * 109.47316 * 30.03955 * 1 2 3 23 23 H 1.08999 * 109.47288 * 150.04177 * 1 2 3 24 24 H 1.07992 * 126.58109 * 359.97438 * 3 2 1 25 25 H 1.07998 * 125.78380 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.46763 * 149.69420 * 7 6 5 27 27 H 1.08995 * 109.47483 * 29.69076 * 7 6 5 28 28 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 29 29 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 30 30 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 31 31 H 1.09000 * 109.46959 * 59.99562 * 11 9 8 32 32 H 1.09006 * 109.47142 * 184.99909 * 12 9 8 33 33 H 1.08991 * 109.47453 * 304.99990 * 12 9 8 34 34 H 0.96996 * 120.00111 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5847 -0.6616 0.0068 6 6 2.3086 -1.0802 0.0006 7 6 1.8522 -2.5164 0.0008 8 7 1.7044 -2.9834 -1.3842 9 6 1.2591 -4.3828 -1.4231 10 1 1.7033 -4.9288 -0.5909 11 6 -0.2660 -4.4360 -1.3118 12 6 1.6966 -5.0205 -2.7432 13 6 3.2015 -5.0794 -2.7982 14 1 3.7873 -4.6995 -1.9741 15 6 3.8305 -5.6182 -3.9004 16 7 3.1173 -6.0804 -4.9041 17 14 5.6959 -5.6906 -3.9688 18 1 6.2598 -5.1086 -2.7244 19 1 6.1321 -7.1041 -4.0968 20 1 6.1787 -4.9156 -5.1400 21 1 -0.3633 0.0008 1.0277 22 1 -0.3634 0.8896 -0.5144 23 1 -0.3634 -0.8903 -0.5132 24 1 2.0367 2.1690 -0.0004 25 1 4.5060 1.2923 0.0011 26 1 0.8937 -2.5929 0.5143 27 1 2.5901 -3.1320 0.5150 28 1 1.0736 -2.3890 -1.9008 29 1 -0.5963 -5.4743 -1.3403 30 1 -0.5777 -3.9816 -0.3714 31 1 -0.7102 -3.8899 -2.1440 32 1 1.2909 -6.0300 -2.8111 33 1 1.3257 -4.4231 -3.5759 34 1 3.5598 -6.4598 -5.6793 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:09 Heat of formation + Delta-G solvation = -20.525770 kcal Electronic energy + Delta-G solvation = -15159.225112 eV Core-core repulsion = 12671.388798 eV Total energy + Delta-G solvation = -2487.836314 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.44431 -38.39889 -35.30963 -34.67936 -32.93503 -30.51956 -29.16718 -28.21241 -25.62127 -24.71176 -22.33202 -21.47245 -20.52194 -18.43053 -17.87112 -17.15112 -16.57339 -16.14964 -15.87445 -15.20245 -14.79447 -14.33866 -13.97378 -13.93375 -13.59832 -13.46673 -13.38132 -13.18204 -13.17660 -12.81968 -12.57081 -12.37587 -12.11081 -11.88628 -11.19992 -11.09351 -10.50013 -10.46833 -9.33720 -9.01931 -8.10736 -6.15037 0.83242 1.38893 1.40224 1.53437 1.70052 2.22732 2.46584 3.21848 3.49389 3.89861 4.03822 4.11547 4.21482 4.32933 4.46082 4.55289 4.61652 4.67896 4.83254 4.90333 4.97960 5.02840 5.19718 5.25994 5.27189 5.36379 5.50223 5.65912 5.74431 5.89879 6.28508 6.31513 6.44416 6.65843 6.99224 7.50504 9.01584 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.007508 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.654333 B = 3728.554493 C = 4528.911138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.184 4.184 3 C -0.222 4.222 4 C -0.048 4.048 5 O -0.197 6.197 6 C -0.028 4.028 7 C 0.142 3.858 8 N -0.680 5.680 9 C 0.099 3.901 10 H 0.064 0.936 11 C -0.170 4.170 12 C 0.036 3.964 13 C -0.499 4.499 14 H 0.052 0.948 15 C -0.007 4.007 16 N -0.940 5.940 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.283 1.283 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.171 0.829 25 H 0.232 0.768 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.338 0.662 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.053 0.947 32 H -0.003 1.003 33 H -0.010 1.010 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 13.089 11.826 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.187 4.187 3 C -0.241 4.241 4 C -0.115 4.115 5 O -0.093 6.093 6 C -0.078 4.078 7 C 0.014 3.986 8 N -0.312 5.312 9 C -0.010 4.010 10 H 0.082 0.918 11 C -0.228 4.228 12 C -0.001 4.001 13 C -0.538 4.538 14 H 0.071 0.929 15 C -0.202 4.202 16 N -0.582 5.582 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.209 1.209 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.188 0.812 25 H 0.248 0.752 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.034 12.642 11.615 17.635 hybrid contribution 0.135 0.002 -0.318 0.346 sum -3.898 12.644 11.297 17.398 Atomic orbital electron populations 1.20224 0.87641 1.03016 1.02801 1.20639 0.98347 0.91974 1.07691 1.22020 0.92396 1.00531 1.09134 1.24755 1.01336 0.80119 1.05332 1.84043 1.29781 1.24117 1.71390 1.22384 0.81052 0.96742 1.07626 1.20284 1.00069 0.87097 0.91161 1.60369 1.55923 1.03107 1.11832 1.21504 0.93017 0.87931 0.98557 0.91822 1.22417 0.96128 1.02542 1.01759 1.19014 0.95084 0.93608 0.92405 1.21530 0.93359 1.36399 1.02462 0.92931 1.25844 1.02673 0.95976 0.95753 1.70088 1.36740 1.43345 1.08066 0.85545 0.80850 0.77610 0.77894 1.19368 1.20380 1.20926 0.90283 0.90332 0.92022 0.81179 0.75157 0.90362 0.90943 0.84332 0.92180 0.91132 0.92783 0.98458 0.99138 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.99 71.23 0.71 -0.88 16 2 C -0.18 -4.87 6.16 -19.94 -0.12 -4.99 16 3 C -0.22 -5.22 10.87 22.19 0.24 -4.98 16 4 C -0.05 -1.20 12.09 66.97 0.81 -0.39 16 5 O -0.20 -6.59 10.65 -2.43 -0.03 -6.61 16 6 C -0.03 -0.88 6.83 24.83 0.17 -0.71 16 7 C 0.14 4.48 5.63 85.56 0.48 4.97 16 8 N -0.68 -25.89 5.95 -495.57 -2.95 -28.84 16 9 C 0.10 3.96 2.53 44.91 0.11 4.07 16 10 H 0.06 2.57 7.80 -2.39 -0.02 2.55 16 11 C -0.17 -5.26 9.16 71.98 0.66 -4.60 16 12 C 0.04 1.92 4.65 29.85 0.14 2.06 16 13 C -0.50 -29.29 8.84 25.60 0.23 -29.07 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 15 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 16 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 17 Si 0.95 46.99 29.54 68.60 2.03 49.02 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.25 7.78 -2.39 -0.02 1.23 16 24 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 25 H 0.23 3.66 8.06 -2.91 -0.02 3.63 16 26 H 0.08 2.00 7.05 -2.39 -0.02 1.99 16 27 H 0.07 2.42 8.06 -2.39 -0.02 2.40 16 28 H 0.34 12.13 8.46 -89.69 -0.76 11.37 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.74 7.45 -2.39 -0.02 1.73 16 31 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 32 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -70.07 290.58 3.54 -66.53 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.31 Total: 13.03 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.89 Total: -34.46 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.67 Total: -87.50 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.03 Total: -6.61 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -70.07 3.54 -66.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.004 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds