Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40893 * 126.29600 * 2 1 4 4 C 1.34845 * 107.42021 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.89014 * 180.02562 * 4 3 2 6 6 N 1.36345 * 108.21884 * 359.97438 * 4 3 2 7 7 C 1.46500 * 125.63697 * 179.73891 * 6 4 3 8 8 C 1.52997 * 109.47054 * 85.00007 * 7 6 4 9 9 O 1.42902 * 109.47301 * 180.02562 * 8 7 6 10 10 C 1.42897 * 114.00332 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47429 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99889 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00570 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99747 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00556 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47105 * 89.99873 * 15 13 11 17 17 H 1.48497 * 109.47142 * 210.00408 * 15 13 11 18 18 H 1.48505 * 109.46658 * 330.00074 * 15 13 11 19 19 C 1.34856 * 126.29013 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47315 * 90.02092 * 1 2 3 21 21 H 1.09003 * 109.47367 * 210.02819 * 1 2 3 22 22 H 1.09004 * 109.47069 * 330.02647 * 1 2 3 23 23 H 1.07995 * 126.28880 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47051 * 269.96483 * 5 4 3 25 25 H 1.08993 * 109.47281 * 29.97165 * 5 4 3 26 26 H 1.09002 * 109.47178 * 149.97393 * 5 4 3 27 27 H 1.09003 * 109.47430 * 205.00146 * 7 6 4 28 28 H 1.09001 * 109.47116 * 325.00000 * 7 6 4 29 29 H 1.09005 * 109.47252 * 299.99807 * 8 7 6 30 30 H 1.08994 * 109.47474 * 60.00231 * 8 7 6 31 31 H 1.09010 * 109.46962 * 299.99880 * 10 9 8 32 32 H 1.08996 * 109.47514 * 59.99539 * 10 9 8 33 33 H 0.97001 * 120.00075 * 179.97438 * 14 13 11 34 34 H 1.07998 * 125.88677 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3410 1.1356 0.0000 4 6 3.6169 0.6993 -0.0006 5 6 4.8478 1.5687 -0.0002 6 7 3.6013 -0.6641 -0.0004 7 6 4.7820 -1.5312 -0.0062 8 6 5.2747 -1.7316 1.4283 9 8 6.4269 -2.5770 1.4226 10 6 6.9689 -2.8296 2.7204 11 6 8.1738 -3.7262 2.5958 12 1 8.4934 -4.0692 1.6227 13 6 8.8682 -4.1087 3.7238 14 7 8.4794 -3.6906 4.9086 15 14 10.3613 -5.2205 3.5694 16 1 11.5814 -4.3906 3.4022 17 1 10.4903 -6.0492 4.7949 18 1 10.1991 -6.1058 2.3881 19 6 2.3051 -1.0870 -0.0005 20 1 -0.3634 -0.0004 -1.0276 21 1 -0.3634 -0.8897 0.5143 22 1 -0.3633 0.8903 0.5134 23 1 2.0177 2.1660 -0.0004 24 1 5.1447 1.7785 -1.0279 25 1 4.6311 2.5051 0.5138 26 1 5.6580 1.0512 0.5135 27 1 4.5214 -2.4971 -0.4392 28 1 5.5702 -1.0679 -0.5997 29 1 5.5355 -0.7658 1.8612 30 1 4.4867 -2.1950 2.0218 31 1 7.2643 -1.8866 3.1806 32 1 6.2160 -3.3163 3.3402 33 1 8.9677 -3.9600 5.7023 34 1 1.9746 -2.1151 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706150356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = -34.062819 kcal Electronic energy + Delta-G solvation = -14663.552966 eV Core-core repulsion = 12175.129642 eV Total energy + Delta-G solvation = -2488.423324 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24182 -38.81837 -35.31991 -34.63380 -32.81358 -31.00448 -29.34807 -27.70928 -26.18329 -24.58391 -23.78187 -20.78570 -19.87836 -18.71728 -17.95250 -17.03089 -16.89085 -16.57254 -15.88389 -15.08442 -14.98083 -14.38710 -14.04053 -13.97367 -13.86365 -13.61714 -13.35337 -13.14011 -12.98163 -12.93853 -12.76269 -12.40653 -12.35346 -12.06341 -12.01981 -11.37991 -10.96433 -10.39934 -9.39617 -8.80382 -8.36728 -6.50592 1.26352 1.39614 1.42341 1.54433 1.85864 2.04374 2.33529 2.97557 3.16196 3.65334 3.95956 4.05824 4.15867 4.21878 4.36445 4.44768 4.57052 4.61038 4.70537 4.74736 4.77598 4.89127 4.99861 5.06067 5.07811 5.26885 5.30529 5.49041 5.60122 5.86740 6.17205 6.35585 6.36689 6.48689 6.70021 7.21410 8.75662 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.054707 B = 0.004555 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.695990 B = 6145.135025 C = 6299.359524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.184 4.184 3 C -0.214 4.214 4 C 0.002 3.998 5 C -0.086 4.086 6 N -0.447 5.447 7 C 0.120 3.880 8 C 0.051 3.949 9 O -0.402 6.402 10 C 0.210 3.790 11 C -0.552 4.552 12 H 0.067 0.933 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.987 3.013 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.033 4.033 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.147 0.853 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.039 0.961 31 H -0.012 1.012 32 H -0.013 1.013 33 H 0.272 0.728 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 7.729 -10.001 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.191 4.191 3 C -0.238 4.238 4 C -0.109 4.109 5 C -0.143 4.143 6 N -0.124 5.124 7 C -0.002 4.002 8 C -0.027 4.027 9 O -0.321 6.321 10 C 0.135 3.865 11 C -0.590 4.590 12 H 0.085 0.915 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.162 4.162 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.165 0.835 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.081 0.919 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.627 7.414 -9.977 16.353 hybrid contribution 0.518 -0.384 0.695 0.948 sum -10.109 7.030 -9.282 15.420 Atomic orbital electron populations 1.20116 0.88561 1.02373 1.01932 1.19898 0.96817 0.92440 1.09906 1.20848 0.91295 0.99145 1.12540 1.20864 0.97830 0.82753 1.09445 1.20395 0.92299 0.98253 1.03376 1.44012 1.05916 1.05732 1.56749 1.21477 0.86987 0.96035 0.95740 1.22660 0.88600 0.94000 0.97456 1.87740 1.43988 1.68612 1.31806 1.19890 0.92735 0.94285 0.79550 1.21383 1.12183 1.30963 0.94459 0.91524 1.26002 1.01323 0.97759 0.94080 1.70075 1.41974 1.46016 0.98906 0.85130 0.77671 0.78098 0.78205 1.19176 1.19962 1.18650 1.22031 0.82128 1.00209 1.11814 0.91420 0.91754 0.91578 0.83533 0.89818 0.88897 0.92725 0.87365 0.87877 0.94130 0.94297 0.99435 0.99530 0.91911 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.38 71.23 0.74 -0.64 16 2 C -0.18 -4.72 6.14 -19.99 -0.12 -4.84 16 3 C -0.21 -5.58 10.71 22.14 0.24 -5.35 16 4 C 0.00 0.06 6.89 41.08 0.28 0.34 16 5 C -0.09 -1.91 9.94 71.24 0.71 -1.20 16 6 N -0.45 -12.78 2.75 -509.97 -1.40 -14.18 16 7 C 0.12 3.52 6.00 86.38 0.52 4.04 16 8 C 0.05 1.92 6.26 71.98 0.45 2.37 16 9 O -0.40 -19.35 10.33 -148.98 -1.54 -20.88 16 10 C 0.21 11.83 5.69 71.24 0.41 12.23 16 11 C -0.55 -32.60 9.43 25.60 0.24 -32.36 16 12 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 15 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 C -0.03 -0.90 11.34 83.22 0.94 0.05 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.35 7.33 -2.39 -0.02 1.33 16 27 H 0.11 2.91 8.12 -2.39 -0.02 2.89 16 28 H 0.10 2.83 7.90 -2.39 -0.02 2.81 16 29 H 0.04 1.55 7.64 -2.38 -0.02 1.53 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -66.28 293.83 5.29 -60.99 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.05 Total: 8.30 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 4.87 Total: -24.49 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.12 Total: -69.62 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.54 Total: -20.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.28 5.29 -60.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706150356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.924 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds