Wall clock time and date at job start Mon Mar 30 2020 02:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99726 * 2 1 4 4 H 1.48501 * 109.46969 * 270.00225 * 3 2 1 5 5 H 1.48497 * 109.46772 * 30.00165 * 3 2 1 6 6 H 1.48492 * 109.46960 * 150.00490 * 3 2 1 7 7 C 1.37874 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00071 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00083 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00000 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99888 * 179.72251 * 11 10 9 14 14 H 1.09000 * 110.05287 * 25.96210 * 13 11 10 15 15 C 1.54384 * 110.07195 * 147.50897 * 13 11 10 16 16 C 1.54930 * 104.22212 * 142.80029 * 15 13 11 17 17 C 1.54992 * 102.81745 * 322.27135 * 16 15 13 18 18 C 1.53489 * 110.06996 * 264.47797 * 13 11 10 19 19 C 1.52572 * 121.05319 * 96.54277 * 18 13 11 20 20 C 1.52545 * 121.08321 * 24.83005 * 18 13 11 21 21 H 0.96997 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47411 * 60.00395 * 9 7 2 23 23 H 1.09007 * 109.47207 * 300.00258 * 9 7 2 24 24 H 0.97004 * 119.99625 * 359.97438 * 10 9 7 25 25 H 1.09003 * 110.47963 * 261.48372 * 15 13 11 26 26 H 1.08994 * 110.47892 * 24.11395 * 15 13 11 27 27 H 1.08999 * 110.74014 * 203.94494 * 16 15 13 28 28 H 1.08999 * 110.74542 * 80.60420 * 16 15 13 29 29 H 1.09005 * 110.50799 * 278.92859 * 17 16 15 30 30 H 1.08996 * 110.51154 * 156.21507 * 17 16 15 31 31 H 1.08999 * 117.50768 * 356.97503 * 19 18 13 32 32 H 1.08995 * 117.50846 * 142.06593 * 19 18 13 33 33 H 1.09009 * 117.50677 * 217.89009 * 20 18 13 34 34 H 1.09001 * 117.51273 * 2.97057 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5617 -5.1049 -0.0011 13 6 2.7334 -6.0287 -0.0074 14 1 3.6779 -5.7153 0.4375 15 6 2.1514 -7.2277 0.7717 16 6 2.6265 -8.4674 -0.0270 17 6 2.5224 -7.9894 -1.4977 18 6 2.9642 -6.5164 -1.4443 19 6 4.1593 -6.0295 -2.2583 20 6 2.7422 -5.5900 -2.6357 21 1 -0.4850 0.8400 0.0004 22 1 0.6243 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.1570 -3.4353 -0.0009 25 1 2.5490 -7.2524 1.7864 26 1 1.0627 -7.1792 0.7888 27 1 1.9669 -9.3168 0.1504 28 1 3.6568 -8.7178 0.2255 29 1 1.4947 -8.0672 -1.8527 30 1 3.1924 -8.5662 -2.1351 31 1 4.8116 -5.2863 -1.7997 32 1 4.6527 -6.7512 -2.9092 33 1 2.3036 -6.0226 -3.5350 34 1 2.4626 -4.5576 -2.4255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706278220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:18 Heat of formation + Delta-G solvation = -35.251649 kcal Electronic energy + Delta-G solvation = -15390.344047 eV Core-core repulsion = 12901.869171 eV Total energy + Delta-G solvation = -2488.474876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96236 -37.46490 -34.36464 -33.78033 -32.28824 -29.38108 -27.05213 -25.54376 -22.79352 -22.32202 -20.76943 -19.98181 -18.62204 -16.89363 -15.90482 -15.51330 -15.28734 -14.80340 -14.31748 -14.00021 -13.53119 -13.01101 -12.64791 -12.34048 -11.96941 -11.78890 -11.40193 -11.31938 -10.99742 -10.93790 -10.89987 -10.69371 -10.46720 -10.31391 -10.10583 -9.74676 -9.38416 -8.81781 -8.72106 -7.84621 -6.15832 -4.22740 3.24411 3.30505 3.32981 3.38998 3.78120 4.23358 4.42399 4.51755 4.73287 4.98169 5.02830 5.20223 5.23505 5.31817 5.53854 5.68172 5.72262 5.74404 5.88575 5.91560 5.97285 6.10985 6.15766 6.21822 6.27327 6.35005 6.51788 7.33316 7.48044 7.53619 7.68613 7.98567 8.66767 8.80468 9.15549 9.44300 10.94401 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045198 B = 0.006369 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.349245 B = 4394.959032 C = 4667.495430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.714 5.714 11 C 0.507 3.493 12 O -0.554 6.554 13 C -0.079 4.079 14 H 0.085 0.915 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.085 4.085 18 C -0.116 4.116 19 C -0.168 4.168 20 C -0.169 4.169 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.389 0.611 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 -13.344 -2.085 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.361 5.361 11 C 0.292 3.708 12 O -0.433 6.433 13 C -0.101 4.101 14 H 0.103 0.897 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.205 4.205 20 C -0.206 4.206 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.221 0.779 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.567 -13.330 -2.072 15.467 hybrid contribution 0.912 1.202 -0.038 1.510 sum 8.479 -12.128 -2.109 14.947 Atomic orbital electron populations 1.69975 1.06112 1.27271 1.48967 1.24951 0.94900 0.99431 0.94716 0.86425 0.79631 0.82697 0.78221 1.20456 1.20995 1.19762 1.21229 0.93226 0.90508 1.53127 0.91968 1.19083 0.88352 0.82062 0.97638 1.46544 1.10928 1.06250 1.72416 1.20310 0.89375 0.84182 0.76927 1.90622 1.16908 1.84774 1.50971 1.21438 0.98658 0.95169 0.94823 0.89651 1.22336 1.02571 0.92285 0.97709 1.22441 1.00897 0.97445 0.94863 1.21858 1.01195 0.92278 0.96936 1.21498 1.03272 0.95547 0.91371 1.23021 0.91115 1.03320 1.03021 1.23044 0.98681 1.00637 0.98257 0.92463 0.95639 0.95649 0.77889 0.91540 0.89521 0.91443 0.91589 0.91000 0.91765 0.88690 0.88858 0.88840 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.86 9.28 -34.45 -0.32 -15.18 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.71 -15.35 5.25 -61.47 -0.32 -15.67 16 11 C 0.51 10.41 5.60 -10.99 -0.06 10.35 16 12 O -0.55 -13.64 15.78 5.56 0.09 -13.56 16 13 C -0.08 -1.22 3.16 -90.79 -0.29 -1.50 16 14 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 15 C -0.11 -1.54 6.33 -24.99 -0.16 -1.70 16 16 C -0.12 -1.32 6.91 -24.66 -0.17 -1.49 16 17 C -0.09 -1.02 6.58 -25.22 -0.17 -1.19 16 18 C -0.12 -1.61 2.26 -154.25 -0.35 -1.96 16 19 C -0.17 -2.03 10.24 -26.91 -0.28 -2.30 16 20 C -0.17 -2.49 9.63 -26.92 -0.26 -2.75 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.39 7.28 8.32 -40.82 -0.34 6.94 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.41 6.92 -51.93 -0.36 1.05 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.10 1.81 7.06 -51.93 -0.37 1.45 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -31.47 283.74 -7.66 -39.13 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.25 Total: 4.82 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.17 Total: -9.36 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.41 Total: -41.26 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.47 -7.66 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706278220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.876 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds