Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 115.55251 * 2 1 4 4 C 1.53005 * 117.49856 * 214.33409 * 2 1 3 5 5 C 1.52996 * 117.49787 * 145.67460 * 2 1 3 6 6 H 1.08998 * 117.50069 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49757 * 214.97571 * 5 2 1 8 8 O 1.21287 * 120.00235 * 0.02562 * 7 5 2 9 9 N 1.34778 * 119.99757 * 179.97438 * 7 5 2 10 10 C 1.37101 * 120.00002 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00128 * 222.68944 * 10 9 7 12 12 C 1.38954 * 119.99544 * 42.68403 * 10 9 7 13 13 N 1.31405 * 120.00329 * 19.32863 * 12 10 9 14 14 Si 1.86801 * 119.99536 * 199.32566 * 12 10 9 15 15 H 1.48499 * 109.47581 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47205 * 120.00093 * 14 12 10 17 17 H 1.48499 * 109.47329 * 239.99930 * 14 12 10 18 18 C 1.46494 * 120.00222 * 0.02562 * 9 7 5 19 19 C 1.53002 * 117.50025 * 183.28368 * 18 9 7 20 20 C 1.53002 * 117.50209 * 114.62543 * 18 9 7 21 21 H 1.09006 * 109.46764 * 34.41195 * 1 2 3 22 22 H 1.09000 * 109.47100 * 274.41847 * 1 2 3 23 23 H 1.08996 * 109.47378 * 154.40924 * 1 2 3 24 24 H 1.08996 * 109.46657 * 85.58624 * 3 2 1 25 25 H 1.09000 * 109.46705 * 205.58470 * 3 2 1 26 26 H 1.08994 * 109.47199 * 325.58383 * 3 2 1 27 27 H 1.08999 * 117.49787 * 359.97438 * 4 2 1 28 28 H 1.09001 * 117.50346 * 145.02165 * 4 2 1 29 29 H 0.97005 * 120.00405 * 174.86554 * 13 12 10 30 30 H 1.09000 * 115.55476 * 328.95396 * 18 9 7 31 31 H 1.08995 * 117.50034 * 359.97438 * 19 18 9 32 32 H 1.09001 * 117.50060 * 145.02368 * 19 18 9 33 33 H 1.08999 * 117.50235 * 214.98812 * 20 18 9 34 34 H 1.09011 * 117.49668 * 359.97436 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5293 -0.7807 1.4610 8 8 3.9716 0.3470 1.4014 9 7 4.1934 -1.7296 2.1502 10 6 5.3693 -1.4202 2.7835 11 1 6.2059 -2.1012 2.7320 12 6 5.4847 -0.2302 3.4917 13 7 4.4053 0.4101 3.8810 14 14 7.1745 0.4592 3.8903 15 1 8.2191 -0.4439 3.3441 16 1 7.3164 1.8056 3.2800 17 1 7.3313 0.5644 5.3633 18 6 3.6589 -3.0916 2.2226 19 6 4.4180 -4.1037 3.0831 20 6 4.4697 -4.2052 1.5567 21 1 -0.3633 0.8479 -0.5808 22 1 -0.3633 0.0792 1.0246 23 1 -0.3634 -0.9268 -0.4439 24 1 2.2753 1.7422 1.0246 25 1 3.1829 1.3083 -0.4438 26 1 1.5818 2.0738 -0.5808 27 1 1.6112 -1.8582 -1.2687 28 1 3.1715 -0.8748 -1.2687 29 1 4.4844 1.2000 4.4385 30 1 2.5723 -3.1726 2.1911 31 1 5.3153 -3.7562 3.5950 32 1 3.8309 -4.8506 3.6174 33 1 3.9167 -5.0188 1.0873 34 1 5.4008 -3.9243 1.0642 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706785995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 26.763059 kcal Electronic energy + Delta-G solvation = -16006.606881 eV Core-core repulsion = 13520.821164 eV Total energy + Delta-G solvation = -2485.785716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.09729 -37.13411 -35.41941 -32.64939 -30.87489 -28.82146 -26.85856 -25.42091 -22.69290 -21.64699 -21.02498 -19.50354 -18.03525 -16.47459 -15.98608 -14.72597 -14.25990 -14.21782 -13.66265 -13.38041 -13.07660 -12.67215 -12.55374 -11.98895 -11.68347 -11.45767 -11.30525 -10.93018 -10.86971 -10.79479 -10.64297 -10.56959 -10.12207 -9.91891 -9.68336 -9.38905 -9.05020 -8.64860 -7.75438 -6.94328 -6.05711 -3.78971 3.31672 3.41690 3.43428 3.91244 4.30636 4.51660 4.79247 4.91305 5.24629 5.32031 5.37105 5.57256 5.64707 5.66091 5.84717 5.95001 6.04849 6.07353 6.11562 6.22882 6.26937 6.31490 6.50473 6.56053 6.61936 6.67343 6.81402 6.84196 6.96938 7.27934 7.66846 8.33048 9.13311 9.25719 9.74537 10.41204 11.03098 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023863 B = 0.012121 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.100163 B = 2309.452812 C = 3164.095534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.093 4.093 4 C -0.158 4.158 5 C -0.163 4.163 6 H 0.102 0.898 7 C 0.510 3.490 8 O -0.525 6.525 9 N -0.427 5.427 10 C -0.349 4.349 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.830 5.830 14 Si 0.910 3.090 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.286 1.286 18 C 0.080 3.920 19 C -0.177 4.177 20 C -0.207 4.207 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -4.904 -5.243 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.196 4.196 5 C -0.184 4.184 6 H 0.120 0.880 7 C 0.298 3.702 8 O -0.402 6.402 9 N -0.147 5.147 10 C -0.475 4.475 11 H 0.094 0.906 12 C -0.137 4.137 13 N -0.464 5.464 14 Si 0.737 3.263 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.213 1.213 18 C -0.026 4.026 19 C -0.215 4.215 20 C -0.246 4.246 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.139 -4.081 -5.215 8.382 hybrid contribution 0.691 0.062 0.426 0.814 sum -4.447 -4.019 -4.789 7.672 Atomic orbital electron populations 1.21335 0.92726 1.01141 1.01605 1.21454 0.93669 0.92336 1.03252 1.21249 0.98977 0.92177 1.02638 1.23091 1.02277 1.01223 0.92978 1.22452 0.99565 1.02203 0.94214 0.88008 1.18882 0.84908 0.85724 0.80705 1.90512 1.68059 1.19997 1.61680 1.42754 1.21771 1.05128 1.45071 1.18876 0.89468 1.06257 1.32948 0.90568 1.25191 0.97202 0.97057 0.94202 1.69853 1.28447 1.18011 1.30050 0.86195 0.83395 0.79484 0.77223 1.19672 1.20705 1.21288 1.21659 0.94587 0.83165 1.03197 1.23084 1.04081 1.01397 0.92919 1.23299 1.03517 1.02137 0.95661 0.92437 0.92390 0.92969 0.91062 0.91890 0.94914 0.89304 0.88961 0.92760 0.88138 0.87575 0.89904 0.89924 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.85 37.16 0.37 -1.24 16 2 C -0.11 -1.93 2.70 -154.51 -0.42 -2.35 16 3 C -0.09 -1.85 8.09 37.16 0.30 -1.55 16 4 C -0.16 -2.72 9.53 -26.69 -0.25 -2.98 16 5 C -0.16 -3.30 5.04 -91.73 -0.46 -3.77 16 6 H 0.10 1.91 6.60 -51.93 -0.34 1.57 16 7 C 0.51 13.13 6.74 -10.98 -0.07 13.05 16 8 O -0.52 -15.20 10.75 5.55 0.06 -15.14 16 9 N -0.43 -10.92 2.85 -107.73 -0.31 -11.22 16 10 C -0.35 -9.67 7.99 -14.93 -0.12 -9.78 16 11 H 0.08 2.06 7.19 -52.49 -0.38 1.68 16 12 C 0.07 2.11 4.35 -17.47 -0.08 2.03 16 13 N -0.83 -24.84 11.67 55.50 0.65 -24.19 16 14 Si 0.91 22.21 29.60 -169.99 -5.03 17.18 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.08 1.66 5.90 -67.93 -0.40 1.26 16 19 C -0.18 -3.29 9.80 -26.69 -0.26 -3.55 16 20 C -0.21 -3.66 10.36 -26.69 -0.28 -3.94 16 21 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 24 H 0.07 1.63 7.26 -51.93 -0.38 1.25 16 25 H 0.06 1.35 7.01 -51.93 -0.36 0.98 16 26 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 27 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 28 H 0.09 1.68 8.05 -51.93 -0.42 1.26 16 29 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 30 H 0.10 1.89 6.47 -51.93 -0.34 1.55 16 31 H 0.11 2.17 6.69 -51.93 -0.35 1.82 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -31.69 278.46 -7.15 -38.84 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.04 Total: 3.14 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.67 Total: -12.80 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.34 Total: -35.42 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.14 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.69 -7.15 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.603 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds