Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 115.55251 * 2 1 4 4 C 1.53005 * 117.49856 * 214.33409 * 2 1 3 5 5 C 1.52996 * 117.49787 * 145.67460 * 2 1 3 6 6 H 1.08998 * 117.50069 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49757 * 214.97571 * 5 2 1 8 8 O 1.21287 * 120.00235 * 0.02562 * 7 5 2 9 9 N 1.34778 * 119.99757 * 179.97438 * 7 5 2 10 10 C 1.37101 * 120.00002 * 180.02562 * 9 7 5 11 11 H 1.07998 * 120.00128 * 222.68944 * 10 9 7 12 12 C 1.38954 * 119.99544 * 42.68403 * 10 9 7 13 13 N 1.31405 * 120.00329 * 19.32863 * 12 10 9 14 14 Si 1.86801 * 119.99536 * 199.32566 * 12 10 9 15 15 H 1.48499 * 109.47581 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47205 * 120.00093 * 14 12 10 17 17 H 1.48499 * 109.47329 * 239.99930 * 14 12 10 18 18 C 1.46494 * 120.00222 * 0.02562 * 9 7 5 19 19 C 1.53002 * 117.50025 * 183.28368 * 18 9 7 20 20 C 1.53002 * 117.50209 * 114.62543 * 18 9 7 21 21 H 1.09006 * 109.46764 * 34.41195 * 1 2 3 22 22 H 1.09000 * 109.47100 * 274.41847 * 1 2 3 23 23 H 1.08996 * 109.47378 * 154.40924 * 1 2 3 24 24 H 1.08996 * 109.46657 * 85.58624 * 3 2 1 25 25 H 1.09000 * 109.46705 * 205.58470 * 3 2 1 26 26 H 1.08994 * 109.47199 * 325.58383 * 3 2 1 27 27 H 1.08999 * 117.49787 * 359.97438 * 4 2 1 28 28 H 1.09001 * 117.50346 * 145.02165 * 4 2 1 29 29 H 0.97005 * 120.00405 * 174.86554 * 13 12 10 30 30 H 1.09000 * 115.55476 * 328.95396 * 18 9 7 31 31 H 1.08995 * 117.50034 * 359.97438 * 19 18 9 32 32 H 1.09001 * 117.50060 * 145.02368 * 19 18 9 33 33 H 1.08999 * 117.50235 * 214.98812 * 20 18 9 34 34 H 1.09011 * 117.49668 * 359.97436 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5293 -0.7807 1.4610 8 8 3.9716 0.3470 1.4014 9 7 4.1934 -1.7296 2.1502 10 6 5.3693 -1.4202 2.7835 11 1 6.2059 -2.1012 2.7320 12 6 5.4847 -0.2302 3.4917 13 7 4.4053 0.4101 3.8810 14 14 7.1745 0.4592 3.8903 15 1 8.2191 -0.4439 3.3441 16 1 7.3164 1.8056 3.2800 17 1 7.3313 0.5644 5.3633 18 6 3.6589 -3.0916 2.2226 19 6 4.4180 -4.1037 3.0831 20 6 4.4697 -4.2052 1.5567 21 1 -0.3633 0.8479 -0.5808 22 1 -0.3633 0.0792 1.0246 23 1 -0.3634 -0.9268 -0.4439 24 1 2.2753 1.7422 1.0246 25 1 3.1829 1.3083 -0.4438 26 1 1.5818 2.0738 -0.5808 27 1 1.6112 -1.8582 -1.2687 28 1 3.1715 -0.8748 -1.2687 29 1 4.4844 1.2000 4.4385 30 1 2.5723 -3.1726 2.1911 31 1 5.3153 -3.7562 3.5950 32 1 3.8309 -4.8506 3.6174 33 1 3.9167 -5.0188 1.0873 34 1 5.4008 -3.9243 1.0642 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706785995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 7.756963 kcal Electronic energy + Delta-G solvation = -16007.431047 eV Core-core repulsion = 13520.821164 eV Total energy + Delta-G solvation = -2486.609883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81480 -38.70728 -37.16331 -34.65613 -32.82245 -30.27610 -28.24475 -27.38236 -24.40901 -23.10314 -22.68944 -21.17728 -19.67036 -18.25275 -17.79969 -16.74259 -15.97551 -15.71575 -15.48829 -14.84313 -14.59067 -14.35419 -14.09679 -13.63404 -13.38122 -13.10086 -12.85733 -12.73660 -12.69130 -12.46533 -12.22824 -12.04982 -11.99333 -11.63402 -11.20670 -10.90405 -10.72263 -10.46916 -9.68425 -8.92334 -8.18576 -5.94514 1.32893 1.40709 1.48213 2.18685 2.36706 2.96940 3.11360 3.13531 3.42718 3.84961 3.91349 4.07660 4.17764 4.29728 4.31710 4.45183 4.50369 4.80488 4.86222 4.88612 4.89646 5.04790 5.07304 5.13408 5.18822 5.20546 5.30855 5.39173 5.46182 5.50547 5.68397 6.21674 7.06370 7.27434 7.76305 8.45754 8.89977 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023863 B = 0.012121 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.100163 B = 2309.452812 C = 3164.095534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.130 4.130 5 C -0.183 4.183 6 H 0.121 0.879 7 C 0.492 3.508 8 O -0.574 6.574 9 N -0.446 5.446 10 C -0.356 4.356 11 H 0.075 0.925 12 C 0.022 3.978 13 N -0.869 5.869 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.296 1.296 17 H -0.273 1.273 18 C 0.049 3.951 19 C -0.174 4.174 20 C -0.179 4.179 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.257 0.743 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -6.963 -6.509 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.143 4.143 4 C -0.168 4.168 5 C -0.204 4.204 6 H 0.139 0.861 7 C 0.282 3.718 8 O -0.455 6.455 9 N -0.166 5.166 10 C -0.484 4.484 11 H 0.093 0.907 12 C -0.184 4.184 13 N -0.504 5.504 14 Si 0.792 3.208 15 H -0.183 1.183 16 H -0.223 1.223 17 H -0.198 1.198 18 C -0.057 4.057 19 C -0.212 4.212 20 C -0.217 4.217 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.523 -6.196 -6.476 11.085 hybrid contribution 1.144 0.655 0.769 1.526 sum -5.379 -5.542 -5.708 9.603 Atomic orbital electron populations 1.21336 0.89300 1.03483 1.01964 1.21661 0.96023 0.90795 1.02499 1.21096 0.98506 0.94562 1.00153 1.23175 1.01951 1.01117 0.90518 1.22323 0.97567 1.04541 0.95992 0.86123 1.19869 0.86462 0.85159 0.80350 1.90478 1.69771 1.21927 1.63308 1.43012 1.21504 1.07286 1.44817 1.19097 0.90809 1.06238 1.32228 0.90741 1.25989 1.00305 0.97518 0.94550 1.69965 1.30341 1.18499 1.31624 0.85304 0.79886 0.77955 0.77614 1.18319 1.22266 1.19825 1.21962 0.96053 0.81289 1.06346 1.23136 1.03030 1.01145 0.93843 1.23300 1.02223 1.01202 0.94996 0.90691 0.92951 0.90144 0.95286 0.94678 0.91658 0.84887 0.90643 0.93335 0.86031 0.90247 0.86457 0.85730 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.62 9.85 71.98 0.71 -1.91 16 2 C -0.11 -3.77 2.70 -52.18 -0.14 -3.91 16 3 C -0.09 -3.45 8.09 71.98 0.58 -2.87 16 4 C -0.13 -4.13 9.53 30.62 0.29 -3.83 16 5 C -0.18 -7.20 5.04 -11.51 -0.06 -7.26 16 6 H 0.12 4.23 6.60 -2.39 -0.02 4.21 16 7 C 0.49 25.88 6.74 87.66 0.59 26.47 16 8 O -0.57 -34.86 10.75 -3.05 -0.03 -34.90 16 9 N -0.45 -23.11 2.85 -613.13 -1.75 -24.86 16 10 C -0.36 -20.25 7.99 84.04 0.67 -19.58 16 11 H 0.07 4.12 7.19 -2.91 -0.02 4.10 16 12 C 0.02 1.32 4.35 84.93 0.37 1.69 16 13 N -0.87 -54.23 11.67 21.66 0.25 -53.98 16 14 Si 0.97 47.08 29.60 68.60 2.03 49.11 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 C 0.05 1.94 5.90 44.99 0.27 2.20 16 19 C -0.17 -6.12 9.80 30.62 0.30 -5.82 16 20 C -0.18 -5.82 10.36 30.62 0.32 -5.50 16 21 H 0.07 1.64 7.93 -2.38 -0.02 1.62 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 1.60 7.90 -2.39 -0.02 1.58 16 24 H 0.03 1.38 7.26 -2.39 -0.02 1.36 16 25 H 0.03 1.55 7.01 -2.39 -0.02 1.54 16 26 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 27 H 0.13 3.06 8.05 -2.39 -0.02 3.04 16 28 H 0.07 2.65 8.05 -2.39 -0.02 2.63 16 29 H 0.26 15.48 8.32 -92.70 -0.77 14.71 16 30 H 0.12 4.26 6.47 -2.39 -0.02 4.25 16 31 H 0.08 3.23 6.69 -2.39 -0.02 3.21 16 32 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -73.14 278.46 5.48 -67.66 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.07 Total: 17.29 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.90 Total: -20.33 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.49 Total: -78.84 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.03 Total: -34.90 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -73.14 5.48 -67.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -73.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds