Wall clock time and date at job start Mon Mar 30 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.51405 * 111.98733 * 2 1 4 4 C 1.54281 * 105.65149 * 56.51296 * 3 2 1 5 5 C 1.52347 * 112.35047 * 56.99405 * 4 3 2 6 6 C 1.55396 * 112.51008 * 306.73473 * 5 4 3 7 7 C 1.51437 * 105.42169 * 56.54243 * 6 5 4 8 8 H 1.08998 * 111.95336 * 57.98882 * 7 6 5 9 9 C 1.50402 * 125.13926 * 200.97271 * 7 6 5 10 10 N 1.43891 * 112.33822 * 211.21325 * 2 1 3 11 11 C 1.34782 * 136.17065 * 103.71298 * 10 2 1 12 12 O 1.21687 * 119.99808 * 359.84493 * 11 10 2 13 13 C 1.46373 * 120.00093 * 179.84275 * 11 10 2 14 14 H 1.07997 * 119.99925 * 353.93216 * 13 11 10 15 15 C 1.40047 * 119.99671 * 173.92269 * 13 11 10 16 16 N 1.30668 * 120.00411 * 6.15929 * 15 13 11 17 17 Si 1.86806 * 119.99989 * 186.15203 * 15 13 11 18 18 H 1.48493 * 109.47150 * 94.98795 * 17 15 13 19 19 H 1.48497 * 109.47297 * 214.99016 * 17 15 13 20 20 H 1.48503 * 109.47073 * 334.98577 * 17 15 13 21 21 H 1.08999 * 109.46361 * 300.42655 * 1 2 3 22 22 H 1.08996 * 109.47215 * 60.43061 * 1 2 3 23 23 H 1.08997 * 109.46681 * 180.43083 * 1 2 3 24 24 H 1.09003 * 110.20218 * 175.54692 * 3 2 1 25 25 H 1.08996 * 110.20670 * 297.34658 * 3 2 1 26 26 H 1.09002 * 108.90383 * 177.72633 * 4 3 2 27 27 H 1.08994 * 108.91091 * 296.25268 * 4 3 2 28 28 H 1.08999 * 108.85644 * 67.81207 * 5 4 3 29 29 H 1.08998 * 108.84838 * 186.29469 * 5 4 3 30 30 H 1.09003 * 110.84532 * 297.40305 * 6 5 4 31 31 H 1.08995 * 110.04112 * 175.26256 * 6 5 4 32 32 H 1.08995 * 114.24373 * 252.30432 * 9 7 6 33 33 H 1.09002 * 114.24049 * 25.04227 * 9 7 6 34 34 H 0.97003 * 120.00563 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0969 1.4039 0.0000 4 6 1.4927 2.0968 1.2390 5 6 1.7969 1.3454 2.5289 6 6 1.3842 -0.1510 2.4573 7 6 2.1195 -0.7147 1.2594 8 1 3.1989 -0.5928 1.3496 9 6 1.7296 -1.9600 0.5117 10 7 2.0769 -1.1383 -0.6897 11 6 2.6511 -1.3656 -1.8877 12 8 2.7971 -0.4501 -2.6760 13 6 3.0992 -2.7137 -2.2406 14 1 3.0602 -3.5050 -1.5067 15 6 3.5783 -2.9772 -3.5299 16 7 3.7389 -1.9980 -4.3801 17 14 3.9881 -4.7286 -4.0342 18 1 2.8211 -5.3297 -4.7283 19 1 5.1576 -4.7195 -4.9492 20 1 4.3114 -5.5289 -2.8258 21 1 -0.3632 0.5205 0.8862 22 1 -0.3633 0.5071 -0.8938 23 1 -0.3632 -1.0276 0.0077 24 1 3.1835 1.3711 0.0794 25 1 1.8021 1.9290 -0.9086 26 1 1.8997 3.1052 1.3133 27 1 0.4118 2.1624 1.1151 28 1 2.8659 1.4116 2.7314 29 1 1.2540 1.8174 3.3478 30 1 0.3078 -0.2502 2.3173 31 1 1.6946 -0.6680 3.3652 32 1 2.3922 -2.8090 0.6800 33 1 0.6729 -2.2158 0.5886 34 1 4.0712 -2.1805 -5.2730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707209144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:15 Heat of formation + Delta-G solvation = 11.113208 kcal Electronic energy + Delta-G solvation = -16037.782561 eV Core-core repulsion = 13551.318216 eV Total energy + Delta-G solvation = -2486.464345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90633 -36.32803 -34.48022 -32.44320 -30.83521 -28.99886 -27.04612 -25.85466 -25.12957 -22.11893 -20.42073 -19.45652 -17.70576 -16.30080 -15.62105 -15.09196 -14.97520 -14.41950 -13.85277 -13.43152 -13.06007 -12.61816 -12.23712 -12.00977 -11.78335 -11.56858 -11.46244 -11.16845 -11.08263 -10.96585 -10.76575 -10.48057 -10.38227 -10.19498 -10.09178 -9.97410 -8.94117 -8.81584 -7.55977 -7.10883 -6.17208 -4.60602 3.14564 3.21310 3.25192 3.99650 4.25228 4.56275 4.76114 5.02433 5.14486 5.40940 5.49695 5.54408 5.64598 5.75532 5.80069 5.92282 5.99069 5.99833 6.10854 6.15852 6.19620 6.25020 6.36841 6.40421 6.48265 6.55705 6.69894 6.71990 6.96849 7.06235 7.46130 8.16741 8.57531 9.04526 9.65457 10.61113 10.81552 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.007897 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.321287 B = 3544.870075 C = 3813.978926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 C -0.098 4.098 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.136 4.136 8 H 0.089 0.911 9 C 0.119 3.881 10 N -0.644 5.644 11 C 0.580 3.420 12 O -0.573 6.573 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.770 5.770 17 Si 0.908 3.092 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 2.268 12.392 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 C -0.136 4.136 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.155 4.155 8 H 0.107 0.893 9 C -0.004 4.004 10 N -0.384 5.384 11 C 0.388 3.612 12 O -0.455 6.455 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.399 5.399 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.654 2.808 11.501 12.721 hybrid contribution 0.172 -0.898 -0.376 0.988 sum -4.482 1.910 11.126 12.145 Atomic orbital electron populations 1.22261 0.95704 1.02025 1.01366 1.21180 0.92305 0.90521 0.90453 1.21378 1.00275 0.94814 0.97122 1.21600 1.00947 0.98411 0.94293 1.21699 1.01120 0.95275 0.97014 1.21739 1.00388 0.94959 0.97788 1.23343 1.00366 0.97738 0.94080 0.89255 1.22422 0.99300 0.94329 0.84393 1.50251 1.63794 1.07445 1.16906 1.18049 0.76869 0.89863 0.76453 1.90608 1.60917 1.46266 1.47746 1.20824 1.44967 0.93932 0.97729 0.91443 1.25722 0.93283 0.98091 0.96173 1.70028 1.32880 1.31923 1.05069 0.86349 0.78398 0.82947 0.79020 1.19796 1.20419 1.18867 0.91612 0.92794 0.92143 0.91671 0.91782 0.92445 0.92002 0.92407 0.92633 0.91129 0.92319 0.91020 0.91036 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 7.75 37.16 0.29 -2.27 16 2 C 0.14 2.74 1.92 -138.12 -0.27 2.47 16 3 C -0.10 -1.77 5.84 -26.87 -0.16 -1.92 16 4 C -0.11 -1.53 5.43 -26.39 -0.14 -1.67 16 5 C -0.11 -1.35 5.83 -25.79 -0.15 -1.50 16 6 C -0.11 -1.38 5.92 -26.25 -0.16 -1.53 16 7 C -0.14 -2.23 3.24 -92.50 -0.30 -2.53 16 8 H 0.09 1.59 8.06 -51.93 -0.42 1.17 16 9 C 0.12 2.18 8.10 -9.50 -0.08 2.10 16 10 N -0.64 -15.35 3.27 -213.68 -0.70 -16.05 16 11 C 0.58 17.32 7.98 -12.99 -0.10 17.21 16 12 O -0.57 -19.35 15.80 5.20 0.08 -19.27 16 13 C -0.54 -15.74 9.39 -35.63 -0.33 -16.08 16 14 H 0.07 1.83 7.75 -52.49 -0.41 1.42 16 15 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 16 N -0.77 -23.65 11.85 55.55 0.66 -23.00 16 17 Si 0.91 20.60 29.56 -169.99 -5.03 15.57 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 21 H 0.07 0.88 4.63 -51.93 -0.24 0.64 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.98 5.99 -51.93 -0.31 0.67 16 24 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.77 6.35 -51.93 -0.33 0.44 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 33 H 0.07 1.16 6.13 -51.93 -0.32 0.84 16 34 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 LS Contribution 266.80 15.07 4.02 4.02 Total: -1.00 -34.75 266.80 -7.30 -42.05 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.84 Total: 0.00 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.49 Total: -3.33 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.04 Total: -39.05 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.08 Total: -19.27 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.75 -7.30 -42.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707209144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.162 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds