Wall clock time and date at job start Mon Mar 30 2020 03:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.51405 * 111.98733 * 2 1 4 4 C 1.54281 * 105.65149 * 56.51296 * 3 2 1 5 5 C 1.52347 * 112.35047 * 56.99405 * 4 3 2 6 6 C 1.55396 * 112.51008 * 306.73473 * 5 4 3 7 7 C 1.51437 * 105.42169 * 56.54243 * 6 5 4 8 8 H 1.08998 * 111.95336 * 57.98882 * 7 6 5 9 9 C 1.50402 * 125.13926 * 200.97271 * 7 6 5 10 10 N 1.43891 * 112.33822 * 211.21325 * 2 1 3 11 11 C 1.34782 * 136.17065 * 103.71298 * 10 2 1 12 12 O 1.21687 * 119.99808 * 359.84493 * 11 10 2 13 13 C 1.46373 * 120.00093 * 179.84275 * 11 10 2 14 14 H 1.07997 * 119.99925 * 353.93216 * 13 11 10 15 15 C 1.40047 * 119.99671 * 173.92269 * 13 11 10 16 16 N 1.30668 * 120.00411 * 6.15929 * 15 13 11 17 17 Si 1.86806 * 119.99989 * 186.15203 * 15 13 11 18 18 H 1.48493 * 109.47150 * 94.98795 * 17 15 13 19 19 H 1.48497 * 109.47297 * 214.99016 * 17 15 13 20 20 H 1.48503 * 109.47073 * 334.98577 * 17 15 13 21 21 H 1.08999 * 109.46361 * 300.42655 * 1 2 3 22 22 H 1.08996 * 109.47215 * 60.43061 * 1 2 3 23 23 H 1.08997 * 109.46681 * 180.43083 * 1 2 3 24 24 H 1.09003 * 110.20218 * 175.54692 * 3 2 1 25 25 H 1.08996 * 110.20670 * 297.34658 * 3 2 1 26 26 H 1.09002 * 108.90383 * 177.72633 * 4 3 2 27 27 H 1.08994 * 108.91091 * 296.25268 * 4 3 2 28 28 H 1.08999 * 108.85644 * 67.81207 * 5 4 3 29 29 H 1.08998 * 108.84838 * 186.29469 * 5 4 3 30 30 H 1.09003 * 110.84532 * 297.40305 * 6 5 4 31 31 H 1.08995 * 110.04112 * 175.26256 * 6 5 4 32 32 H 1.08995 * 114.24373 * 252.30432 * 9 7 6 33 33 H 1.09002 * 114.24049 * 25.04227 * 9 7 6 34 34 H 0.97003 * 120.00563 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0969 1.4039 0.0000 4 6 1.4927 2.0968 1.2390 5 6 1.7969 1.3454 2.5289 6 6 1.3842 -0.1510 2.4573 7 6 2.1195 -0.7147 1.2594 8 1 3.1989 -0.5928 1.3496 9 6 1.7296 -1.9600 0.5117 10 7 2.0769 -1.1383 -0.6897 11 6 2.6511 -1.3656 -1.8877 12 8 2.7971 -0.4501 -2.6760 13 6 3.0992 -2.7137 -2.2406 14 1 3.0602 -3.5050 -1.5067 15 6 3.5783 -2.9772 -3.5299 16 7 3.7389 -1.9980 -4.3801 17 14 3.9881 -4.7286 -4.0342 18 1 2.8211 -5.3297 -4.7283 19 1 5.1576 -4.7195 -4.9492 20 1 4.3114 -5.5289 -2.8258 21 1 -0.3632 0.5205 0.8862 22 1 -0.3633 0.5071 -0.8938 23 1 -0.3632 -1.0276 0.0077 24 1 3.1835 1.3711 0.0794 25 1 1.8021 1.9290 -0.9086 26 1 1.8997 3.1052 1.3133 27 1 0.4118 2.1624 1.1151 28 1 2.8659 1.4116 2.7314 29 1 1.2540 1.8174 3.3478 30 1 0.3078 -0.2502 2.3173 31 1 1.6946 -0.6680 3.3652 32 1 2.3922 -2.8090 0.6800 33 1 0.6729 -2.2158 0.5886 34 1 4.0712 -2.1805 -5.2730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707209144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:14 Heat of formation + Delta-G solvation = -13.322469 kcal Electronic energy + Delta-G solvation = -16038.842171 eV Core-core repulsion = 13551.318216 eV Total energy + Delta-G solvation = -2487.523955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39391 -38.40790 -35.95620 -34.65931 -32.10473 -30.67083 -28.69977 -27.70696 -26.53617 -23.70045 -21.73631 -20.98963 -19.40096 -18.24152 -17.47605 -16.75070 -16.33268 -16.01538 -15.51603 -14.88383 -14.60175 -14.26012 -13.92485 -13.49912 -13.35611 -12.97037 -12.90010 -12.80690 -12.75771 -12.51783 -12.29884 -12.15789 -11.98230 -11.80439 -11.43150 -11.11575 -10.96959 -10.37040 -9.75799 -9.00501 -8.31710 -6.87305 1.35060 1.37361 1.53293 2.18580 2.42641 2.55453 3.32650 3.54415 3.90674 4.02400 4.08713 4.26707 4.31652 4.41833 4.49565 4.59101 4.68223 4.74786 4.77272 4.86511 5.03033 5.05611 5.07146 5.20948 5.25796 5.27894 5.35199 5.39440 5.44924 5.50503 5.73439 5.98472 6.54684 6.83526 7.63229 8.45802 8.66035 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.007897 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.321287 B = 3544.870075 C = 3813.978926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.113 3.887 3 C -0.101 4.101 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.101 4.101 7 C -0.109 4.109 8 H 0.067 0.933 9 C 0.119 3.881 10 N -0.668 5.668 11 C 0.559 3.441 12 O -0.635 6.635 13 C -0.568 4.568 14 H 0.082 0.918 15 C 0.026 3.974 16 N -0.826 5.826 17 Si 1.001 2.999 18 H -0.261 1.261 19 H -0.270 1.270 20 H -0.248 1.248 21 H 0.108 0.892 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 0.936 15.273 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.139 4.139 7 C -0.128 4.128 8 H 0.085 0.915 9 C -0.003 4.003 10 N -0.406 5.406 11 C 0.366 3.634 12 O -0.523 6.523 13 C -0.604 4.604 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.456 5.456 17 Si 0.820 3.180 18 H -0.186 1.186 19 H -0.195 1.195 20 H -0.171 1.171 21 H 0.126 0.874 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.980 1.476 14.471 15.728 hybrid contribution 0.569 -0.404 -1.221 1.407 sum -5.411 1.072 13.250 14.353 Atomic orbital electron populations 1.22213 0.93095 1.02644 1.02371 1.21758 0.94282 0.90293 0.91010 1.21434 0.98821 0.95082 0.98658 1.21569 1.01466 0.98695 0.92511 1.21730 1.01579 0.94858 0.96823 1.21769 1.00756 0.94995 0.96346 1.23063 0.99555 0.95414 0.94801 0.91457 1.22751 1.00991 0.94825 0.81711 1.50253 1.62809 1.11228 1.16286 1.18406 0.77405 0.89733 0.77809 1.90535 1.63452 1.47760 1.50565 1.21334 1.45713 0.94382 0.98986 0.89993 1.27054 0.92223 1.03901 0.95664 1.70208 1.34054 1.35448 1.05848 0.84972 0.78531 0.75444 0.79101 1.18565 1.19486 1.17075 0.87361 0.94938 0.91711 0.94590 0.95018 0.91113 0.90341 0.92839 0.88953 0.89278 0.89636 0.91004 0.88109 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 7.75 71.98 0.56 -3.98 16 2 C 0.11 4.33 1.92 0.90 0.00 4.34 16 3 C -0.10 -3.81 5.84 30.51 0.18 -3.63 16 4 C -0.10 -2.54 5.43 30.81 0.17 -2.37 16 5 C -0.11 -2.19 5.83 31.20 0.18 -2.01 16 6 C -0.10 -2.03 5.92 30.91 0.18 -1.85 16 7 C -0.11 -3.39 3.24 -10.42 -0.03 -3.42 16 8 H 0.07 2.38 8.06 -2.39 -0.02 2.36 16 9 C 0.12 4.19 8.10 81.10 0.66 4.85 16 10 N -0.67 -32.79 3.27 -948.18 -3.10 -35.89 16 11 C 0.56 35.17 7.98 86.36 0.69 35.86 16 12 O -0.64 -45.99 15.80 -4.31 -0.07 -46.06 16 13 C -0.57 -34.31 9.39 24.83 0.23 -34.07 16 14 H 0.08 4.51 7.75 -2.91 -0.02 4.48 16 15 C 0.03 1.52 5.49 85.30 0.47 1.99 16 16 N -0.83 -53.07 11.85 21.83 0.26 -52.81 16 17 Si 1.00 42.72 29.56 68.60 2.03 44.74 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 21 H 0.11 2.42 4.63 -2.39 -0.01 2.41 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.94 5.99 -2.39 -0.01 1.93 16 24 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.67 6.35 -2.39 -0.02 1.65 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.54 5.91 -2.39 -0.01 1.52 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.10 2.99 6.13 -2.39 -0.01 2.97 16 34 H 0.27 15.88 8.29 -92.71 -0.77 15.11 16 Total: -1.00 -83.01 266.80 3.49 -79.52 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.09 Total: 14.80 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 3.28 Total: -4.30 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.84 Total: -88.70 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.07 Total: -46.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -83.01 3.49 -79.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707209144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.196 kcal (2) G-P(sol) polarization free energy of solvation -83.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds