Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50715 * 111.14040 * 2 1 4 4 C 1.50072 * 115.08598 * 163.61026 * 3 2 1 5 5 C 1.52549 * 110.86108 * 312.25511 * 4 3 2 6 6 C 1.53012 * 108.98661 * 63.18361 * 5 4 3 7 7 C 1.52369 * 111.37509 * 132.53363 * 2 1 3 8 8 H 1.08998 * 114.86773 * 330.80189 * 7 2 1 9 9 C 1.53991 * 82.69061 * 84.99597 * 7 2 1 10 10 N 1.46565 * 111.28619 * 229.59674 * 2 1 3 11 11 C 1.34771 * 136.46541 * 96.09674 * 10 2 1 12 12 O 1.21694 * 119.99935 * 359.97438 * 11 10 2 13 13 C 1.46375 * 120.00278 * 179.97438 * 11 10 2 14 14 H 1.07999 * 120.00014 * 353.92235 * 13 11 10 15 15 C 1.40051 * 119.99802 * 173.92434 * 13 11 10 16 16 N 1.30669 * 120.00205 * 6.15145 * 15 13 11 17 17 Si 1.86804 * 119.99617 * 186.14584 * 15 13 11 18 18 H 1.48504 * 109.46812 * 94.98458 * 17 15 13 19 19 H 1.48495 * 109.46947 * 214.98556 * 17 15 13 20 20 H 1.48498 * 109.47355 * 334.98704 * 17 15 13 21 21 H 1.08999 * 109.46875 * 170.89885 * 1 2 3 22 22 H 1.09003 * 109.47202 * 290.89464 * 1 2 3 23 23 H 1.08999 * 109.46881 * 50.90069 * 1 2 3 24 24 H 1.09000 * 108.54751 * 284.07033 * 3 2 1 25 25 H 1.08997 * 108.55364 * 41.65767 * 3 2 1 26 26 H 1.08998 * 109.34245 * 191.90450 * 4 3 2 27 27 H 1.08996 * 109.24526 * 72.54822 * 4 3 2 28 28 H 1.08999 * 109.55295 * 303.33147 * 5 4 3 29 29 H 1.08999 * 109.55329 * 183.03556 * 5 4 3 30 30 H 1.09005 * 109.54211 * 176.75133 * 6 5 4 31 31 H 1.09002 * 109.61110 * 56.53603 * 6 5 4 32 32 H 1.09008 * 113.51518 * 272.51392 * 9 7 2 33 33 H 1.08997 * 113.58301 * 141.92339 * 9 7 2 34 34 H 0.97005 * 119.99467 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4057 0.0000 4 6 3.5192 1.5289 0.3835 5 6 3.8154 0.7305 1.6492 6 6 3.5664 -0.7534 1.3715 7 6 2.0854 -0.9592 1.0455 8 1 1.4485 -1.1050 1.9181 9 6 1.8899 -1.9899 -0.0817 10 7 2.0621 -0.8852 -1.0400 11 6 2.5087 -0.7492 -2.3042 12 8 2.5219 0.3482 -2.8301 13 6 2.9777 -1.9213 -3.0449 14 1 3.0588 -2.8770 -2.5484 15 6 3.3215 -1.8035 -4.3974 16 7 3.3392 -0.6276 -4.9671 17 14 3.7548 -3.3275 -5.3871 18 1 2.5471 -3.8135 -6.1017 19 1 4.8127 -2.9925 -6.3739 20 1 4.2489 -4.3878 -4.4724 21 1 -0.3633 -1.0147 -0.1626 22 1 -0.3634 0.3665 0.9601 23 1 -0.3633 0.6481 -0.7975 24 1 1.9643 1.8197 -1.0024 25 1 1.4786 2.0076 0.6868 26 1 3.7581 2.5778 0.5589 27 1 4.1400 1.1525 -0.4295 28 1 3.1608 1.0659 2.4536 29 1 4.8560 0.8779 1.9384 30 1 3.8304 -1.3386 2.2524 31 1 4.1739 -1.0742 0.5252 32 1 0.8929 -2.4304 -0.1003 33 1 2.6822 -2.7368 -0.1319 34 1 3.5777 -0.5461 -5.9038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707209149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -14.751617 kcal Electronic energy + Delta-G solvation = -16237.361858 eV Core-core repulsion = 13749.775930 eV Total energy + Delta-G solvation = -2487.585928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55394 -36.05878 -34.36339 -32.46070 -31.36688 -29.30483 -26.68347 -25.69313 -24.72056 -21.92010 -20.69773 -19.78819 -17.52935 -16.07336 -15.35655 -15.26858 -14.34613 -14.16365 -14.08887 -13.66927 -13.11939 -12.70402 -12.22601 -11.80994 -11.68363 -11.45335 -11.26672 -11.16003 -11.08378 -10.95569 -10.71257 -10.50017 -10.36047 -10.13665 -9.92711 -9.84928 -9.15499 -8.82953 -7.51381 -7.13886 -6.17522 -4.60563 3.14021 3.21058 3.24713 4.06171 4.42746 4.57743 4.81115 5.16392 5.35072 5.43681 5.61552 5.67800 5.80243 5.85773 5.91560 6.03398 6.08470 6.11903 6.18941 6.25188 6.30478 6.38296 6.46686 6.51079 6.65064 6.74463 6.81305 6.90125 7.04876 7.15969 7.45926 8.16128 8.55594 9.04621 9.71683 10.60981 10.81919 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.009113 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.076597 B = 3071.648843 C = 3132.827250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.165 3.835 3 C -0.110 4.110 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.095 4.095 7 C -0.123 4.123 8 H 0.081 0.919 9 C 0.108 3.892 10 N -0.648 5.648 11 C 0.588 3.412 12 O -0.572 6.572 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.907 3.093 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -1.201 11.503 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.079 3.921 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.132 4.132 7 C -0.142 4.142 8 H 0.099 0.901 9 C -0.017 4.017 10 N -0.389 5.389 11 C 0.396 3.604 12 O -0.454 6.454 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.556 -0.440 10.748 10.869 hybrid contribution 0.026 -0.876 -0.584 1.053 sum -1.530 -1.316 10.164 10.362 Atomic orbital electron populations 1.22116 0.95712 1.02135 1.01022 1.20705 0.92599 0.91753 0.87081 1.20445 0.95752 0.95868 1.02736 1.20746 0.97348 0.98833 0.97699 1.21366 1.00237 0.95671 0.97792 1.21279 0.94775 0.96102 1.01066 1.22910 0.96944 0.98102 0.96208 0.90074 1.22805 0.99729 0.92234 0.86968 1.49960 1.68057 1.07628 1.13244 1.17872 0.76782 0.89940 0.75843 1.90594 1.60431 1.28344 1.66034 1.20819 1.46888 0.94841 0.94973 0.91585 1.25696 0.93199 0.96389 0.97874 1.70028 1.34891 1.23287 1.11619 0.86373 0.78582 0.82231 0.79675 1.19835 1.20438 1.18898 0.92292 0.92686 0.92504 0.90313 0.93184 0.92926 0.91578 0.92583 0.92646 0.92475 0.91040 0.92179 0.91773 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.86 37.16 0.33 -2.20 16 2 C 0.17 3.12 1.39 -141.15 -0.20 2.93 16 3 C -0.11 -2.09 4.74 -29.33 -0.14 -2.22 16 4 C -0.11 -1.93 5.82 -28.42 -0.17 -2.10 16 5 C -0.11 -1.66 5.88 -26.96 -0.16 -1.82 16 6 C -0.09 -1.46 5.54 -26.71 -0.15 -1.61 16 7 C -0.12 -1.94 4.08 -90.41 -0.37 -2.31 16 8 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 9 C 0.11 1.97 7.29 -11.01 -0.08 1.89 16 10 N -0.65 -15.03 3.11 -180.36 -0.56 -15.59 16 11 C 0.59 17.07 7.92 -12.99 -0.10 16.97 16 12 O -0.57 -18.61 14.44 5.19 0.07 -18.54 16 13 C -0.54 -15.56 9.39 -35.63 -0.33 -15.90 16 14 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 15 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 16 N -0.77 -23.32 11.85 55.55 0.66 -22.66 16 17 Si 0.91 20.52 29.56 -169.99 -5.03 15.49 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 21 H 0.06 0.96 6.51 -51.93 -0.34 0.62 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.08 1.81 6.98 -51.93 -0.36 1.44 16 25 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 32 H 0.06 1.01 6.83 -51.92 -0.35 0.65 16 33 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 34 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 271.91 15.07 4.10 4.10 Total: -1.00 -33.45 271.91 -7.43 -40.88 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.21 Total: 0.30 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.46 Total: -3.98 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.10 Total: -38.25 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.07 Total: -18.54 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.45 -7.43 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707209149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.128 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds