Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50715 * 111.14040 * 2 1 4 4 C 1.50072 * 115.08598 * 163.61026 * 3 2 1 5 5 C 1.52549 * 110.86108 * 312.25511 * 4 3 2 6 6 C 1.53012 * 108.98661 * 63.18361 * 5 4 3 7 7 C 1.52369 * 111.37509 * 132.53363 * 2 1 3 8 8 H 1.08998 * 114.86773 * 330.80189 * 7 2 1 9 9 C 1.53991 * 82.69061 * 84.99597 * 7 2 1 10 10 N 1.46565 * 111.28619 * 229.59674 * 2 1 3 11 11 C 1.34771 * 136.46541 * 96.09674 * 10 2 1 12 12 O 1.21694 * 119.99935 * 359.97438 * 11 10 2 13 13 C 1.46375 * 120.00278 * 179.97438 * 11 10 2 14 14 H 1.07999 * 120.00014 * 353.92235 * 13 11 10 15 15 C 1.40051 * 119.99802 * 173.92434 * 13 11 10 16 16 N 1.30669 * 120.00205 * 6.15145 * 15 13 11 17 17 Si 1.86804 * 119.99617 * 186.14584 * 15 13 11 18 18 H 1.48504 * 109.46812 * 94.98458 * 17 15 13 19 19 H 1.48495 * 109.46947 * 214.98556 * 17 15 13 20 20 H 1.48498 * 109.47355 * 334.98704 * 17 15 13 21 21 H 1.08999 * 109.46875 * 170.89885 * 1 2 3 22 22 H 1.09003 * 109.47202 * 290.89464 * 1 2 3 23 23 H 1.08999 * 109.46881 * 50.90069 * 1 2 3 24 24 H 1.09000 * 108.54751 * 284.07033 * 3 2 1 25 25 H 1.08997 * 108.55364 * 41.65767 * 3 2 1 26 26 H 1.08998 * 109.34245 * 191.90450 * 4 3 2 27 27 H 1.08996 * 109.24526 * 72.54822 * 4 3 2 28 28 H 1.08999 * 109.55295 * 303.33147 * 5 4 3 29 29 H 1.08999 * 109.55329 * 183.03556 * 5 4 3 30 30 H 1.09005 * 109.54211 * 176.75133 * 6 5 4 31 31 H 1.09002 * 109.61110 * 56.53603 * 6 5 4 32 32 H 1.09008 * 113.51518 * 272.51392 * 9 7 2 33 33 H 1.08997 * 113.58301 * 141.92339 * 9 7 2 34 34 H 0.97005 * 119.99467 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4057 0.0000 4 6 3.5192 1.5289 0.3835 5 6 3.8154 0.7305 1.6492 6 6 3.5664 -0.7534 1.3715 7 6 2.0854 -0.9592 1.0455 8 1 1.4485 -1.1050 1.9181 9 6 1.8899 -1.9899 -0.0817 10 7 2.0621 -0.8852 -1.0400 11 6 2.5087 -0.7492 -2.3042 12 8 2.5219 0.3482 -2.8301 13 6 2.9777 -1.9213 -3.0449 14 1 3.0588 -2.8770 -2.5484 15 6 3.3215 -1.8035 -4.3974 16 7 3.3392 -0.6276 -4.9671 17 14 3.7548 -3.3275 -5.3871 18 1 2.5471 -3.8135 -6.1017 19 1 4.8127 -2.9925 -6.3739 20 1 4.2489 -4.3878 -4.4724 21 1 -0.3633 -1.0147 -0.1626 22 1 -0.3634 0.3665 0.9601 23 1 -0.3633 0.6481 -0.7975 24 1 1.9643 1.8197 -1.0024 25 1 1.4786 2.0076 0.6868 26 1 3.7581 2.5778 0.5589 27 1 4.1400 1.1525 -0.4295 28 1 3.1608 1.0659 2.4536 29 1 4.8560 0.8779 1.9384 30 1 3.8304 -1.3386 2.2524 31 1 4.1739 -1.0742 0.5252 32 1 0.8929 -2.4304 -0.1003 33 1 2.6822 -2.7368 -0.1319 34 1 3.5777 -0.5461 -5.9038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707209149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -37.540240 kcal Electronic energy + Delta-G solvation = -16238.350047 eV Core-core repulsion = 13749.775930 eV Total energy + Delta-G solvation = -2488.574117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07085 -38.17075 -35.85422 -34.64562 -32.75507 -31.05427 -28.47243 -27.44539 -26.17277 -23.50522 -22.22295 -21.34626 -19.34776 -17.98717 -17.26840 -16.76262 -16.03193 -15.94245 -15.48192 -15.10846 -14.78228 -14.27661 -13.99895 -13.46344 -13.44256 -13.05206 -12.81291 -12.71714 -12.55311 -12.51318 -12.45460 -12.18248 -11.94701 -11.84621 -11.37302 -11.23756 -10.95346 -10.58773 -9.70020 -8.99456 -8.30314 -6.84836 1.34102 1.36154 1.51587 2.19241 2.46051 2.72950 3.40972 3.56392 3.94179 3.99778 4.04278 4.25947 4.42080 4.52841 4.53412 4.63355 4.69836 4.81379 4.82277 4.91004 4.95522 5.06684 5.10332 5.18214 5.22323 5.28984 5.33672 5.37652 5.52164 5.62466 5.72045 6.00194 6.54400 6.85506 7.74651 8.49232 8.69477 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.009113 C = 0.008935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.076597 B = 3071.648843 C = 3132.827250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.146 3.854 3 C -0.108 4.108 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.098 4.098 7 C -0.093 4.093 8 H 0.133 0.867 9 C 0.101 3.899 10 N -0.668 5.668 11 C 0.571 3.429 12 O -0.627 6.627 13 C -0.569 4.569 14 H 0.077 0.923 15 C 0.029 3.971 16 N -0.824 5.824 17 Si 0.996 3.004 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.250 1.250 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.027 0.973 24 H 0.022 0.978 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.008 0.992 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -3.002 14.457 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.061 3.939 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.135 4.135 7 C -0.111 4.111 8 H 0.151 0.849 9 C -0.023 4.023 10 N -0.406 5.406 11 C 0.378 3.622 12 O -0.514 6.514 13 C -0.606 4.606 14 H 0.095 0.905 15 C -0.186 4.186 16 N -0.454 5.454 17 Si 0.815 3.185 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.173 1.173 21 H 0.082 0.918 22 H 0.118 0.882 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.152 -2.265 13.777 14.127 hybrid contribution 0.175 -0.252 -1.420 1.453 sum -1.976 -2.516 12.357 12.765 Atomic orbital electron populations 1.22089 0.93758 1.02067 1.02448 1.21231 0.94196 0.91740 0.86718 1.20450 0.97190 0.96610 1.00389 1.20737 0.95660 1.00309 0.97810 1.21344 1.02061 0.94335 0.96402 1.21340 0.93904 0.97232 1.01029 1.22883 0.97756 0.94221 0.96258 0.84893 1.23150 1.00794 0.91895 0.86446 1.49782 1.66933 1.11422 1.12447 1.18113 0.77000 0.89303 0.77788 1.90534 1.62582 1.29967 1.68365 1.21307 1.47726 0.95382 0.96200 0.90519 1.26963 0.92254 1.00396 0.98965 1.70204 1.36262 1.26581 1.12336 0.85039 0.78691 0.77055 0.77696 1.18675 1.19497 1.17281 0.91816 0.88193 0.95381 0.95958 0.89475 0.91391 0.97260 0.89090 0.91184 0.88499 0.95315 0.90010 0.92145 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 8.86 71.98 0.64 -3.91 16 2 C 0.15 5.38 1.39 -2.47 0.00 5.38 16 3 C -0.11 -4.14 4.74 28.91 0.14 -4.00 16 4 C -0.11 -3.86 5.82 29.50 0.17 -3.69 16 5 C -0.10 -2.73 5.88 30.45 0.18 -2.56 16 6 C -0.10 -2.72 5.54 30.61 0.17 -2.55 16 7 C -0.09 -2.59 4.08 -10.66 -0.04 -2.63 16 8 H 0.13 2.53 8.09 -2.39 -0.02 2.51 16 9 C 0.10 3.52 7.29 81.46 0.59 4.11 16 10 N -0.67 -31.71 3.11 -842.76 -2.62 -34.33 16 11 C 0.57 35.12 7.92 86.36 0.68 35.81 16 12 O -0.63 -44.11 14.44 -4.33 -0.06 -44.17 16 13 C -0.57 -34.26 9.39 24.83 0.23 -34.03 16 14 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 15 C 0.03 1.67 5.49 85.31 0.47 2.14 16 16 N -0.82 -52.60 11.85 21.84 0.26 -52.34 16 17 Si 1.00 42.92 29.56 68.60 2.03 44.95 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 21 H 0.06 1.91 6.51 -2.39 -0.02 1.90 16 22 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.02 1.08 6.98 -2.39 -0.02 1.06 16 25 H 0.09 2.62 8.00 -2.39 -0.02 2.60 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.03 1.04 7.70 -2.39 -0.02 1.02 16 32 H 0.08 2.52 6.83 -2.38 -0.02 2.50 16 33 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 34 H 0.27 15.78 8.29 -92.70 -0.77 15.01 16 Total: -1.00 -81.42 271.91 3.90 -77.52 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.07 Total: 14.30 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 3.23 Total: -5.93 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.37 Total: -86.67 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.06 Total: -44.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -81.42 3.90 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707209149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.979 kcal (2) G-P(sol) polarization free energy of solvation -81.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds