Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86805 * 119.99757 * 2 1 4 4 H 1.48498 * 109.46909 * 90.00074 * 3 2 1 5 5 H 1.48496 * 109.47072 * 210.00085 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99908 * 3 2 1 7 7 C 1.40050 * 120.00155 * 180.27379 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 180.02562 * 9 7 2 12 12 C 1.47716 * 136.59797 * 359.97438 * 11 9 7 13 13 C 1.52682 * 87.13064 * 149.68933 * 12 11 9 14 14 H 1.09003 * 114.22572 * 275.56910 * 13 12 11 15 15 C 1.52039 * 116.29647 * 140.61895 * 13 12 11 16 16 C 1.52944 * 108.76788 * 187.98980 * 15 13 12 17 17 C 1.53249 * 109.45177 * 358.94004 * 16 15 13 18 18 C 1.52903 * 110.71432 * 83.22911 * 17 16 15 19 19 C 1.53692 * 109.32045 * 259.40167 * 18 17 16 20 20 C 1.46107 * 136.59321 * 179.62555 * 11 9 7 21 21 H 1.08998 * 112.98925 * 96.22799 * 20 11 9 22 22 H 0.97005 * 120.00029 * 359.72378 * 1 2 3 23 23 H 1.09004 * 113.60422 * 264.25155 * 12 11 9 24 24 H 1.08998 * 113.60385 * 35.12379 * 12 11 9 25 25 H 1.08996 * 109.56340 * 307.78391 * 15 13 12 26 26 H 1.09000 * 109.55888 * 68.11176 * 15 13 12 27 27 H 1.08999 * 109.08718 * 239.17856 * 16 15 13 28 28 H 1.09005 * 109.85994 * 119.17438 * 16 15 13 29 29 H 1.09005 * 109.23355 * 322.91275 * 17 16 15 30 30 H 1.09000 * 109.19612 * 203.52631 * 17 16 15 31 31 H 1.08993 * 109.49958 * 139.43888 * 18 17 16 32 32 H 1.09006 * 109.51579 * 19.36258 * 18 17 16 33 33 H 1.09002 * 109.58977 * 300.07732 * 19 18 17 34 34 H 1.09001 * 109.59318 * 179.63738 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 1.4001 5 1 3.5382 1.4403 -0.7000 6 1 1.4381 2.6527 -0.7000 7 6 2.0070 -1.2128 -0.0058 8 1 3.0870 -1.2129 -0.0062 9 6 1.2752 -2.4805 -0.0124 10 8 0.0583 -2.4805 -0.0124 11 7 1.9491 -3.6477 -0.0175 12 6 3.3647 -4.0696 -0.0188 13 6 2.9152 -5.3129 0.7449 14 1 2.8346 -5.1709 1.8227 15 6 3.5878 -6.6205 0.3587 16 6 2.8780 -7.7697 1.0762 17 6 1.7549 -7.2071 1.9541 18 6 0.4902 -6.9696 1.1282 19 6 0.3820 -5.4761 0.7821 20 6 1.6104 -5.0689 -0.0180 21 1 1.6127 -5.5067 -1.0161 22 1 -0.4850 0.8401 0.0041 23 1 3.7548 -4.2856 -1.0135 24 1 4.0161 -3.4140 0.5590 25 1 3.5167 -6.7630 -0.7195 26 1 4.6360 -6.5935 0.6566 27 1 3.5976 -8.2984 1.7012 28 1 2.4566 -8.4590 0.3445 29 1 2.0801 -6.2633 2.3921 30 1 1.5346 -7.9160 2.7522 31 1 -0.3833 -7.2737 1.7047 32 1 0.5407 -7.5533 0.2089 33 1 0.3332 -4.8907 1.7003 34 1 -0.5151 -5.3027 0.1876 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707342287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -27.653710 kcal Electronic energy + Delta-G solvation = -15823.650492 eV Core-core repulsion = 13335.505087 eV Total energy + Delta-G solvation = -2488.145405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80621 -38.43944 -36.39009 -34.67119 -33.34115 -30.58684 -28.21090 -27.59159 -25.14497 -23.73557 -22.33180 -20.75002 -19.76443 -18.54488 -17.56229 -16.62698 -16.06545 -15.86018 -15.59939 -15.28771 -14.83792 -14.29462 -14.00534 -13.81052 -13.31814 -13.05648 -12.96855 -12.88344 -12.75122 -12.45233 -12.05777 -12.04687 -11.95984 -11.26334 -11.17377 -10.98610 -10.90852 -10.81280 -9.83043 -9.11538 -8.32684 -6.89348 1.35529 1.38089 1.53420 2.19396 2.41491 2.69107 3.45837 3.50567 3.87507 4.03455 4.11686 4.28814 4.33406 4.37309 4.39658 4.51932 4.67088 4.73250 4.84175 4.88521 4.97855 5.11686 5.17644 5.26804 5.27074 5.30756 5.40236 5.42546 5.48456 5.60501 5.69402 5.95868 6.47334 6.82342 7.64503 8.43956 8.64591 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049653 B = 0.007448 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.778308 B = 3758.644864 C = 4150.230975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.249 1.249 6 H -0.270 1.270 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.565 3.435 10 O -0.630 6.630 11 N -0.683 5.683 12 C 0.106 3.894 13 C -0.099 4.099 14 H 0.101 0.899 15 C -0.102 4.102 16 C -0.110 4.110 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.111 4.111 20 C 0.124 3.876 21 H 0.071 0.929 22 H 0.275 0.725 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.782 -13.003 2.178 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.172 1.172 6 H -0.195 1.195 7 C -0.604 4.604 8 H 0.099 0.901 9 C 0.373 3.627 10 O -0.517 6.517 11 N -0.421 5.421 12 C -0.017 4.017 13 C -0.118 4.118 14 H 0.118 0.882 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.172 4.172 18 C -0.139 4.139 19 C -0.150 4.150 20 C 0.020 3.980 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.828 -12.697 2.161 15.615 hybrid contribution -0.409 1.130 -0.194 1.218 sum 8.420 -11.567 1.967 14.441 Atomic orbital electron populations 1.70200 1.09593 1.29025 1.36585 1.27040 0.95587 1.05004 0.91136 0.84982 0.78711 0.74765 0.79592 1.18359 1.17236 1.19459 1.21325 0.94411 0.89789 1.54865 0.90066 1.18267 0.86107 0.82595 0.75777 1.90545 1.16006 1.87076 1.58060 1.49928 1.09315 1.04319 1.78526 1.22886 0.84366 0.94442 1.00012 1.22909 0.94423 0.94982 0.99498 0.88159 1.21314 1.00033 0.91705 1.00908 1.21650 0.97161 0.97047 0.98852 1.21952 0.94852 1.01766 0.98643 1.21640 0.98894 0.92616 1.00759 1.21548 0.97052 0.97903 0.98481 1.22305 0.95876 0.81933 0.97890 0.91140 0.91483 0.89915 0.91480 0.91202 0.89507 0.90228 0.90997 0.91745 0.91051 0.91675 0.90603 0.94987 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.50 11.83 21.84 0.26 -52.24 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 1.00 42.40 29.56 68.60 2.03 44.43 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.57 -34.12 9.40 24.83 0.23 -33.89 16 8 H 0.08 4.45 7.79 -2.91 -0.02 4.43 16 9 C 0.57 35.27 7.95 86.36 0.69 35.96 16 10 O -0.63 -44.89 15.40 -4.33 -0.07 -44.95 16 11 N -0.68 -33.50 3.61 -882.31 -3.18 -36.69 16 12 C 0.11 3.77 7.99 80.37 0.64 4.41 16 13 C -0.10 -2.93 2.79 -11.18 -0.03 -2.96 16 14 H 0.10 3.09 5.83 -2.39 -0.01 3.08 16 15 C -0.10 -2.01 5.84 30.26 0.18 -1.83 16 16 C -0.11 -1.89 6.09 30.66 0.19 -1.71 16 17 C -0.14 -2.96 5.44 30.65 0.17 -2.79 16 18 C -0.10 -2.68 5.84 30.79 0.18 -2.51 16 19 C -0.11 -4.35 5.31 30.54 0.16 -4.18 16 20 C 0.12 4.79 3.48 39.15 0.14 4.92 16 21 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 22 H 0.28 15.78 8.29 -92.70 -0.77 15.01 16 23 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.07 1.33 7.94 -2.39 -0.02 1.31 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.13 7.59 -2.38 -0.02 1.11 16 29 H 0.06 1.66 4.64 -2.38 -0.01 1.65 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.78 7.42 -2.38 -0.02 1.77 16 33 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.30 269.92 3.12 -77.18 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.08 Total: 14.80 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 3.01 Total: -2.53 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.93 Total: -88.93 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.07 Total: -44.95 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -80.30 3.12 -77.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707342287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.528 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds