Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99989 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99965 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99800 * 359.72267 * 7 2 1 10 10 O 1.21683 * 120.00055 * 0.27707 * 9 7 2 11 11 N 1.34774 * 119.99501 * 180.27774 * 9 7 2 12 12 C 1.46507 * 119.99686 * 180.02562 * 11 9 7 13 13 H 1.09005 * 110.44888 * 32.40169 * 12 11 9 14 14 C 1.55916 * 110.50737 * 269.66295 * 12 11 9 15 15 C 1.56243 * 105.86776 * 234.76624 * 14 12 11 16 16 C 1.51731 * 101.92234 * 334.75006 * 15 14 12 17 17 H 1.08995 * 111.64410 * 288.10675 * 16 15 14 18 18 C 1.51739 * 122.51423 * 153.03000 * 16 15 14 19 19 C 1.56251 * 101.91775 * 206.96642 * 18 16 15 20 20 C 1.55921 * 105.86976 * 25.25177 * 19 18 16 21 21 C 1.49963 * 104.08223 * 6.58045 * 20 19 18 22 22 H 1.09005 * 108.49757 * 77.61259 * 21 20 19 23 23 H 0.97004 * 119.99542 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00718 * 359.97438 * 11 9 7 25 25 H 1.09000 * 110.16926 * 353.86586 * 14 12 11 26 26 H 1.09004 * 110.16937 * 115.66400 * 14 12 11 27 27 H 1.09001 * 110.94053 * 216.59165 * 15 14 12 28 28 H 1.09000 * 110.97496 * 92.92446 * 15 14 12 29 29 H 1.08999 * 110.93761 * 88.81253 * 18 16 15 30 30 H 1.08997 * 110.97658 * 325.13744 * 18 16 15 31 31 H 1.09003 * 110.17210 * 266.15257 * 19 18 16 32 32 H 1.08998 * 110.17262 * 144.35700 * 19 18 16 33 33 H 1.09004 * 110.50616 * 247.93021 * 20 19 18 34 34 H 1.08993 * 110.50521 * 125.23244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0050 10 8 0.0582 -2.4805 0.0050 11 7 1.9490 -3.6476 0.0102 12 6 1.2164 -4.9164 0.0152 13 1 0.2794 -4.8174 -0.5329 14 6 0.9502 -5.3877 1.4774 15 6 1.5329 -6.8342 1.5728 16 6 1.4710 -7.2930 0.1278 17 1 0.4460 -7.4838 -0.1898 18 6 2.4161 -8.3368 -0.4377 19 6 2.4561 -7.9498 -1.9510 20 6 2.1069 -6.4314 -2.0121 21 6 2.0564 -6.0104 -0.5737 22 1 3.0779 -5.8953 -0.2110 23 1 -0.4850 0.8401 0.0004 24 1 2.9190 -3.6477 0.0098 25 1 1.4588 -4.7303 2.1826 26 1 -0.1209 -5.3998 1.6792 27 1 0.9103 -7.4639 2.2084 28 1 2.5617 -6.8175 1.9325 29 1 2.0135 -9.3407 -0.3029 30 1 3.4053 -8.2522 0.0123 31 1 1.7177 -8.5279 -2.5065 32 1 3.4527 -8.1229 -2.3570 33 1 1.1378 -6.2813 -2.4882 34 1 2.8837 -5.8820 -2.5438 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707906442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = -53.531375 kcal Electronic energy + Delta-G solvation = -15518.314212 eV Core-core repulsion = 13029.046668 eV Total energy + Delta-G solvation = -2489.267544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.95609 -36.91298 -34.04782 -32.49079 -31.74996 -29.09127 -26.47977 -26.34729 -24.59205 -20.80859 -20.19793 -19.68887 -18.82080 -17.06132 -15.59337 -15.30792 -14.90049 -14.48009 -14.22334 -13.67499 -12.87357 -12.63485 -12.52778 -12.17579 -12.08870 -11.45875 -11.12517 -11.09168 -11.00871 -10.74496 -10.54154 -10.41880 -10.40472 -10.21900 -10.16099 -9.93257 -9.71555 -8.80831 -7.54687 -7.40323 -6.13777 -4.59462 3.18060 3.22715 3.24717 4.13802 4.31525 4.62962 4.76057 4.87962 5.05843 5.32442 5.38587 5.39320 5.59255 5.65956 5.77595 5.83559 5.87876 5.94005 5.99458 6.07464 6.16287 6.20864 6.30039 6.36785 6.44742 6.58193 6.64428 6.75831 6.93411 7.47208 8.00023 8.20339 8.39774 9.06861 9.61979 10.65565 10.85225 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050085 B = 0.006430 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.915896 B = 4353.734706 C = 4552.635471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.760 5.760 12 C 0.169 3.831 13 H 0.079 0.921 14 C -0.132 4.132 15 C -0.108 4.108 16 C -0.112 4.112 17 H 0.078 0.922 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.111 4.111 22 H 0.064 0.936 23 H 0.268 0.732 24 H 0.378 0.622 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -12.863 -0.621 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.413 5.413 12 C 0.062 3.938 13 H 0.097 0.903 14 C -0.171 4.171 15 C -0.146 4.146 16 C -0.131 4.131 17 H 0.097 0.903 18 C -0.147 4.147 19 C -0.159 4.159 20 C -0.144 4.144 21 C -0.130 4.130 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.210 0.790 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.588 -12.732 -0.630 13.548 hybrid contribution 0.963 0.839 0.032 1.278 sum 5.552 -11.892 -0.598 13.138 Atomic orbital electron populations 1.70018 1.07026 1.27239 1.35524 1.25696 0.94592 1.00206 0.92654 0.86460 0.79831 0.81190 0.79391 1.19336 1.20587 1.19339 1.20875 0.93504 0.89579 1.54495 0.91612 1.18196 0.87219 0.82542 0.76126 1.90587 1.14095 1.86869 1.54845 1.46224 1.08233 1.04776 1.82105 1.20319 0.95907 0.83615 0.93913 0.90315 1.23388 1.00817 0.94567 0.98355 1.21939 1.00688 0.96671 0.95266 1.22364 0.99455 0.95353 0.95961 0.90346 1.21939 0.99247 0.98009 0.95521 1.22921 1.01000 0.95934 0.96090 1.21411 1.01811 0.94901 0.96268 1.21889 1.00215 0.95546 0.95394 0.91759 0.92139 0.79029 0.91419 0.91899 0.92295 0.91854 0.92084 0.91661 0.91966 0.92112 0.91681 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 16.02 7.75 -12.99 -0.10 15.92 16 10 O -0.58 -19.05 14.67 5.20 0.08 -18.97 16 11 N -0.76 -17.31 5.05 -55.16 -0.28 -17.59 16 12 C 0.17 3.32 3.15 -67.87 -0.21 3.11 16 13 H 0.08 1.78 7.55 -51.93 -0.39 1.39 16 14 C -0.13 -2.34 6.73 -23.43 -0.16 -2.50 16 15 C -0.11 -1.48 6.60 -25.63 -0.17 -1.65 16 16 C -0.11 -1.49 2.98 -89.46 -0.27 -1.75 16 17 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 18 C -0.11 -1.21 6.60 -25.63 -0.17 -1.38 16 19 C -0.12 -1.35 6.94 -23.43 -0.16 -1.51 16 20 C -0.11 -1.47 6.73 -26.68 -0.18 -1.65 16 21 C -0.11 -1.71 2.12 -91.19 -0.19 -1.90 16 22 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 23 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 24 H 0.38 7.69 8.45 -40.82 -0.34 7.35 16 25 H 0.07 1.29 7.98 -51.93 -0.41 0.88 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 276.34 15.07 4.16 4.16 Total: -1.00 -33.20 276.34 -7.78 -40.98 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.33 Total: 5.74 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.05 Total: -6.96 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.38 Total: -40.35 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.20 -7.78 -40.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707906442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.548 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds