Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99989 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99965 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99800 * 359.72267 * 7 2 1 10 10 O 1.21683 * 120.00055 * 0.27707 * 9 7 2 11 11 N 1.34774 * 119.99501 * 180.27774 * 9 7 2 12 12 C 1.46507 * 119.99686 * 180.02562 * 11 9 7 13 13 H 1.09005 * 110.44888 * 32.40169 * 12 11 9 14 14 C 1.55916 * 110.50737 * 269.66295 * 12 11 9 15 15 C 1.56243 * 105.86776 * 234.76624 * 14 12 11 16 16 C 1.51731 * 101.92234 * 334.75006 * 15 14 12 17 17 H 1.08995 * 111.64410 * 288.10675 * 16 15 14 18 18 C 1.51739 * 122.51423 * 153.03000 * 16 15 14 19 19 C 1.56251 * 101.91775 * 206.96642 * 18 16 15 20 20 C 1.55921 * 105.86976 * 25.25177 * 19 18 16 21 21 C 1.49963 * 104.08223 * 6.58045 * 20 19 18 22 22 H 1.09005 * 108.49757 * 77.61259 * 21 20 19 23 23 H 0.97004 * 119.99542 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00718 * 359.97438 * 11 9 7 25 25 H 1.09000 * 110.16926 * 353.86586 * 14 12 11 26 26 H 1.09004 * 110.16937 * 115.66400 * 14 12 11 27 27 H 1.09001 * 110.94053 * 216.59165 * 15 14 12 28 28 H 1.09000 * 110.97496 * 92.92446 * 15 14 12 29 29 H 1.08999 * 110.93761 * 88.81253 * 18 16 15 30 30 H 1.08997 * 110.97658 * 325.13744 * 18 16 15 31 31 H 1.09003 * 110.17210 * 266.15257 * 19 18 16 32 32 H 1.08998 * 110.17262 * 144.35700 * 19 18 16 33 33 H 1.09004 * 110.50616 * 247.93021 * 20 19 18 34 34 H 1.08993 * 110.50521 * 125.23244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0050 10 8 0.0582 -2.4805 0.0050 11 7 1.9490 -3.6476 0.0102 12 6 1.2164 -4.9164 0.0152 13 1 0.2794 -4.8174 -0.5329 14 6 0.9502 -5.3877 1.4774 15 6 1.5329 -6.8342 1.5728 16 6 1.4710 -7.2930 0.1278 17 1 0.4460 -7.4838 -0.1898 18 6 2.4161 -8.3368 -0.4377 19 6 2.4561 -7.9498 -1.9510 20 6 2.1069 -6.4314 -2.0121 21 6 2.0564 -6.0104 -0.5737 22 1 3.0779 -5.8953 -0.2110 23 1 -0.4850 0.8401 0.0004 24 1 2.9190 -3.6477 0.0098 25 1 1.4588 -4.7303 2.1826 26 1 -0.1209 -5.3998 1.6792 27 1 0.9103 -7.4639 2.2084 28 1 2.5617 -6.8175 1.9325 29 1 2.0135 -9.3407 -0.3029 30 1 3.4053 -8.2522 0.0123 31 1 1.7177 -8.5279 -2.5065 32 1 3.4527 -8.1229 -2.3570 33 1 1.1378 -6.2813 -2.4882 34 1 2.8837 -5.8820 -2.5438 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707906442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = -75.993127 kcal Electronic energy + Delta-G solvation = -15519.288227 eV Core-core repulsion = 13029.046668 eV Total energy + Delta-G solvation = -2490.241559 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24973 -38.96283 -35.58812 -34.56886 -33.48116 -30.47931 -28.38571 -27.58232 -26.08408 -22.42975 -21.45914 -21.08787 -20.34804 -19.04664 -17.44880 -16.98937 -16.21624 -16.02113 -15.59420 -15.16550 -14.58196 -14.46769 -13.90281 -13.72956 -13.41694 -13.13751 -12.81178 -12.65331 -12.44276 -12.36326 -12.05821 -12.03543 -11.69049 -11.51399 -11.36401 -11.15229 -10.96553 -10.92217 -9.83818 -9.40231 -8.28834 -6.86160 1.38717 1.42716 1.54321 2.24379 2.47405 3.07241 3.23172 3.60046 3.79994 3.86450 4.19186 4.21302 4.28263 4.42513 4.53540 4.62035 4.70640 4.76963 4.83320 4.90714 5.03804 5.13726 5.17011 5.24135 5.27440 5.30423 5.31104 5.40557 5.54089 5.61360 5.88971 6.24629 6.35759 6.86222 7.57995 8.50952 8.68355 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050085 B = 0.006430 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.915896 B = 4353.734706 C = 4552.635471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.161 3.839 13 H 0.036 0.964 14 C -0.132 4.132 15 C -0.093 4.093 16 C -0.102 4.102 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.114 4.114 22 H 0.074 0.926 23 H 0.274 0.726 24 H 0.392 0.608 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -13.963 -0.519 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.614 4.614 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.401 5.401 12 C 0.056 3.944 13 H 0.054 0.946 14 C -0.172 4.172 15 C -0.130 4.130 16 C -0.121 4.121 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.133 4.133 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.226 0.774 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.093 -13.891 -0.528 15.606 hybrid contribution 0.149 1.156 -0.009 1.165 sum 7.242 -12.735 -0.537 14.660 Atomic orbital electron populations 1.70197 1.09585 1.28947 1.36599 1.26998 0.95528 1.05013 0.91166 0.85061 0.78191 0.74659 0.80292 1.17815 1.19848 1.17791 1.21436 0.94686 0.90284 1.54953 0.89578 1.18604 0.86850 0.84474 0.75850 1.90539 1.16274 1.87995 1.57285 1.45928 1.08868 1.04639 1.80624 1.20497 0.94847 0.83619 0.95470 0.94555 1.23320 1.00005 0.97550 0.96311 1.21861 1.01619 0.93379 0.96181 1.22377 0.99804 0.94889 0.95053 0.91043 1.21939 0.99103 0.98042 0.94788 1.22879 1.02315 0.93210 0.96675 1.21484 1.01025 0.97504 0.94930 1.21814 0.99751 0.94742 0.96995 0.90734 0.91612 0.77430 0.93149 0.93530 0.90246 0.90200 0.89924 0.90491 0.90913 0.90355 0.93307 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.85 11.83 21.84 0.26 -51.59 16 2 C 0.03 1.59 5.50 85.30 0.47 2.06 16 3 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.58 -33.72 9.54 24.83 0.24 -33.48 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.54 32.42 7.75 86.36 0.67 33.09 16 10 O -0.63 -44.04 14.67 -4.29 -0.06 -44.10 16 11 N -0.75 -35.23 5.05 -446.64 -2.25 -37.48 16 12 C 0.16 6.61 3.15 45.02 0.14 6.75 16 13 H 0.04 1.78 7.55 -2.38 -0.02 1.76 16 14 C -0.13 -4.83 6.73 32.73 0.22 -4.61 16 15 C -0.09 -2.35 6.60 31.30 0.21 -2.14 16 16 C -0.10 -2.48 2.98 -10.04 -0.03 -2.51 16 17 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 18 C -0.10 -1.82 6.60 31.31 0.21 -1.62 16 19 C -0.11 -2.15 6.94 32.74 0.23 -1.92 16 20 C -0.11 -2.98 6.73 30.63 0.21 -2.77 16 21 C -0.11 -3.41 2.12 -11.16 -0.02 -3.44 16 22 H 0.07 2.10 7.73 -2.38 -0.02 2.09 16 23 H 0.27 15.62 8.29 -92.71 -0.77 14.86 16 24 H 0.39 16.08 8.45 -92.71 -0.78 15.30 16 25 H 0.05 1.98 7.98 -2.39 -0.02 1.96 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.11 276.34 2.80 -73.31 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.30 Total: 26.60 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 2.53 Total: -10.60 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.00 Total: -89.07 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.06 Total: -44.10 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -76.11 2.80 -73.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707906442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.680 kcal (2) G-P(sol) polarization free energy of solvation -76.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds