Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48504 * 109.47275 * 240.00448 * 3 2 1 5 5 H 1.48507 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47300 * 120.00050 * 3 2 1 7 7 C 1.40044 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00189 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99954 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00437 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00248 * 179.97438 * 11 9 7 13 13 H 1.09000 * 110.41737 * 32.49418 * 12 11 9 14 14 C 1.55198 * 110.45015 * 269.89092 * 12 11 9 15 15 C 1.54864 * 102.57999 * 203.21057 * 14 12 11 16 16 C 1.54199 * 104.39555 * 38.09451 * 15 14 12 17 17 H 1.09000 * 111.38217 * 97.90700 * 16 15 14 18 18 C 1.54197 * 108.91216 * 221.82148 * 16 15 14 19 19 C 1.54862 * 104.28286 * 138.11422 * 18 16 15 20 20 C 1.54859 * 102.73759 * 321.89553 * 19 18 16 21 21 C 1.54192 * 110.47145 * 154.99863 * 12 11 9 22 22 H 1.09004 * 111.91378 * 20.40344 * 21 12 11 23 23 H 0.96996 * 119.99780 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99434 * 359.97438 * 11 9 7 25 25 H 1.09002 * 110.89905 * 84.92595 * 14 12 11 26 26 H 1.08992 * 110.77123 * 321.44237 * 14 12 11 27 27 H 1.09002 * 110.47294 * 279.32784 * 15 14 12 28 28 H 1.09001 * 110.46943 * 156.85496 * 15 14 12 29 29 H 1.09005 * 110.46418 * 256.81464 * 18 16 15 30 30 H 1.08999 * 110.46722 * 19.40935 * 18 16 15 31 31 H 1.08997 * 110.75571 * 203.58111 * 19 18 16 32 32 H 1.08999 * 110.91439 * 80.28058 * 19 18 16 33 33 H 1.09006 * 110.46710 * 279.40518 * 20 19 18 34 34 H 1.08998 * 110.47386 * 156.80224 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6478 -0.0005 12 6 1.2165 -4.9165 0.0000 13 1 0.2800 -4.8151 -0.5484 14 6 0.9483 -5.3871 1.4544 15 6 0.7541 -6.9141 1.2844 16 6 1.7851 -7.3144 0.2098 17 1 2.6923 -7.7172 0.6601 18 6 1.1306 -8.3168 -0.7619 19 6 1.6139 -7.8634 -2.1616 20 6 1.5929 -6.3192 -2.0463 21 6 2.0804 -6.0382 -0.6106 22 1 3.1416 -5.7899 -0.5927 23 1 -0.4849 0.8400 -0.0004 24 1 2.9190 -3.6477 -0.0009 25 1 0.0450 -4.9248 1.8524 26 1 1.8055 -5.1755 2.0934 27 1 -0.2574 -7.1341 0.9429 28 1 0.9601 -7.4312 2.2215 29 1 1.4715 -9.3304 -0.5507 30 1 0.0442 -8.2576 -0.6961 31 1 0.9263 -8.2024 -2.9363 32 1 2.6239 -8.2223 -2.3596 33 1 0.5804 -5.9403 -2.1861 34 1 2.2716 -5.8733 -2.7734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707906450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -66.704284 kcal Electronic energy + Delta-G solvation = -15545.010858 eV Core-core repulsion = 13055.172093 eV Total energy + Delta-G solvation = -2489.838764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.53286 -36.84356 -33.77554 -32.46148 -31.78294 -29.17716 -26.76797 -26.26522 -24.15345 -20.84676 -20.39847 -19.27968 -18.76579 -16.97064 -16.05139 -15.33185 -14.81897 -14.28961 -13.94823 -13.75204 -13.24710 -12.52202 -12.44901 -12.09903 -11.78443 -11.44508 -11.05277 -10.94929 -10.86270 -10.63957 -10.54574 -10.45973 -10.35295 -10.27895 -10.21735 -10.03964 -9.93328 -8.80528 -7.54923 -7.37553 -6.13818 -4.59407 3.18051 3.22717 3.24705 4.14032 4.58912 4.63203 4.74744 4.81423 5.07389 5.39900 5.44564 5.49448 5.69849 5.72898 5.80265 5.84645 5.87491 5.96312 6.05840 6.08249 6.18989 6.23543 6.29266 6.35085 6.45108 6.55979 6.68542 6.77959 6.91845 7.47235 8.00322 8.21029 8.39929 9.06879 9.62077 10.65583 10.85273 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052359 B = 0.006446 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.637262 B = 4342.557829 C = 4505.407340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.582 6.582 11 N -0.760 5.760 12 C 0.160 3.840 13 H 0.082 0.918 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.091 4.091 17 H 0.073 0.927 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.099 4.099 22 H 0.076 0.924 23 H 0.268 0.732 24 H 0.378 0.622 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -12.800 -0.948 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.414 5.414 12 C 0.053 3.947 13 H 0.100 0.900 14 C -0.175 4.175 15 C -0.156 4.156 16 C -0.110 4.110 17 H 0.092 0.908 18 C -0.156 4.156 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.118 4.118 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.210 0.790 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.558 -12.670 -0.958 13.195 hybrid contribution 0.995 0.828 0.057 1.295 sum 4.552 -11.842 -0.902 12.719 Atomic orbital electron populations 1.70016 1.07024 1.27240 1.35535 1.25696 0.94593 1.00210 0.92655 0.86460 0.79829 0.81187 0.79391 1.19333 1.20592 1.19340 1.20873 0.93508 0.89586 1.54482 0.91611 1.18191 0.87212 0.82527 0.76118 1.90588 1.14093 1.86892 1.54876 1.46174 1.08254 1.04867 1.82086 1.21576 0.95429 0.83594 0.94081 0.89982 1.22999 1.01739 0.93989 0.98749 1.22464 0.98559 0.96668 0.97917 1.22302 0.98051 0.94986 0.95636 0.90811 1.22503 1.00303 0.98051 0.94746 1.22516 1.00638 0.96238 0.96880 1.22473 1.01681 0.95021 0.96326 1.22616 0.99673 0.94894 0.94641 0.90535 0.92143 0.79043 0.91550 0.91907 0.91684 0.92425 0.92322 0.91438 0.92049 0.91935 0.91235 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.55 -15.70 9.54 -35.63 -0.34 -16.04 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.56 16.01 7.75 -12.98 -0.10 15.91 16 10 O -0.58 -19.02 14.67 5.20 0.08 -18.94 16 11 N -0.76 -17.27 5.15 -53.48 -0.28 -17.54 16 12 C 0.16 3.12 2.76 -66.14 -0.18 2.94 16 13 H 0.08 1.85 6.62 -51.93 -0.34 1.50 16 14 C -0.14 -2.43 6.60 -24.58 -0.16 -2.59 16 15 C -0.12 -1.65 6.35 -25.12 -0.16 -1.81 16 16 C -0.09 -1.18 3.74 -88.55 -0.33 -1.51 16 17 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.12 -1.36 6.36 -25.12 -0.16 -1.52 16 19 C -0.13 -1.45 6.90 -24.77 -0.17 -1.62 16 20 C -0.12 -1.68 6.36 -25.12 -0.16 -1.84 16 21 C -0.10 -1.50 3.43 -88.55 -0.30 -1.80 16 22 H 0.08 1.12 7.80 -51.93 -0.41 0.72 16 23 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 24 H 0.38 7.63 8.39 -40.82 -0.34 7.29 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.90 7.21 -51.93 -0.37 0.52 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.79 7.21 -51.93 -0.37 0.41 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.10 7.21 -51.93 -0.37 0.73 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 273.53 15.07 4.12 4.12 Total: -1.00 -33.21 273.53 -7.75 -40.96 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.14 Total: 6.26 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.17 Total: -7.49 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.38 Total: -40.30 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.21 -7.75 -40.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707906450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.743 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds