Wall clock time and date at job start Mon Mar 30 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48504 * 109.47275 * 240.00448 * 3 2 1 5 5 H 1.48507 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47300 * 120.00050 * 3 2 1 7 7 C 1.40044 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00189 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99954 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00437 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00248 * 179.97438 * 11 9 7 13 13 H 1.09000 * 110.41737 * 32.49418 * 12 11 9 14 14 C 1.55198 * 110.45015 * 269.89092 * 12 11 9 15 15 C 1.54864 * 102.57999 * 203.21057 * 14 12 11 16 16 C 1.54199 * 104.39555 * 38.09451 * 15 14 12 17 17 H 1.09000 * 111.38217 * 97.90700 * 16 15 14 18 18 C 1.54197 * 108.91216 * 221.82148 * 16 15 14 19 19 C 1.54862 * 104.28286 * 138.11422 * 18 16 15 20 20 C 1.54859 * 102.73759 * 321.89553 * 19 18 16 21 21 C 1.54192 * 110.47145 * 154.99863 * 12 11 9 22 22 H 1.09004 * 111.91378 * 20.40344 * 21 12 11 23 23 H 0.96996 * 119.99780 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99434 * 359.97438 * 11 9 7 25 25 H 1.09002 * 110.89905 * 84.92595 * 14 12 11 26 26 H 1.08992 * 110.77123 * 321.44237 * 14 12 11 27 27 H 1.09002 * 110.47294 * 279.32784 * 15 14 12 28 28 H 1.09001 * 110.46943 * 156.85496 * 15 14 12 29 29 H 1.09005 * 110.46418 * 256.81464 * 18 16 15 30 30 H 1.08999 * 110.46722 * 19.40935 * 18 16 15 31 31 H 1.08997 * 110.75571 * 203.58111 * 19 18 16 32 32 H 1.08999 * 110.91439 * 80.28058 * 19 18 16 33 33 H 1.09006 * 110.46710 * 279.40518 * 20 19 18 34 34 H 1.08998 * 110.47386 * 156.80224 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6478 -0.0005 12 6 1.2165 -4.9165 0.0000 13 1 0.2800 -4.8151 -0.5484 14 6 0.9483 -5.3871 1.4544 15 6 0.7541 -6.9141 1.2844 16 6 1.7851 -7.3144 0.2098 17 1 2.6923 -7.7172 0.6601 18 6 1.1306 -8.3168 -0.7619 19 6 1.6139 -7.8634 -2.1616 20 6 1.5929 -6.3192 -2.0463 21 6 2.0804 -6.0382 -0.6106 22 1 3.1416 -5.7899 -0.5927 23 1 -0.4849 0.8400 -0.0004 24 1 2.9190 -3.6477 -0.0009 25 1 0.0450 -4.9248 1.8524 26 1 1.8055 -5.1755 2.0934 27 1 -0.2574 -7.1341 0.9429 28 1 0.9601 -7.4312 2.2215 29 1 1.4715 -9.3304 -0.5507 30 1 0.0442 -8.2576 -0.6961 31 1 0.9263 -8.2024 -2.9363 32 1 2.6239 -8.2223 -2.3596 33 1 0.5804 -5.9403 -2.1861 34 1 2.2716 -5.8733 -2.7734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707906450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:50 Heat of formation + Delta-G solvation = -89.316646 kcal Electronic energy + Delta-G solvation = -15545.991403 eV Core-core repulsion = 13055.172093 eV Total energy + Delta-G solvation = -2490.819310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86461 -38.86938 -35.37937 -34.52116 -33.44960 -30.61009 -28.35125 -27.89586 -25.59917 -22.34361 -21.81442 -20.92500 -20.11729 -18.88230 -17.53781 -17.26369 -16.23981 -15.79956 -15.60689 -15.13199 -14.52856 -14.48748 -14.27854 -13.47497 -13.28156 -12.97392 -12.80325 -12.64899 -12.53356 -12.06180 -11.91484 -11.87915 -11.67125 -11.61606 -11.52835 -11.32683 -11.13005 -10.91750 -9.84016 -9.35813 -8.28620 -6.85746 1.38775 1.42787 1.54354 2.24548 2.47751 3.14778 3.50754 3.54627 3.72104 3.76466 4.28797 4.32374 4.37247 4.45289 4.53943 4.65529 4.69818 4.80465 4.84770 4.93874 5.04627 5.09707 5.11287 5.18243 5.30773 5.33479 5.36402 5.38786 5.49682 5.60941 5.89504 6.25714 6.37399 6.86529 7.59147 8.51585 8.68887 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.052359 B = 0.006446 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.637262 B = 4342.557829 C = 4505.407340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.634 6.634 11 N -0.748 5.748 12 C 0.152 3.848 13 H 0.041 0.959 14 C -0.136 4.136 15 C -0.109 4.109 16 C -0.083 4.083 17 H 0.099 0.901 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.092 4.092 22 H 0.088 0.912 23 H 0.274 0.726 24 H 0.393 0.607 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.116 -13.992 -0.916 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.614 4.614 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.401 5.401 12 C 0.046 3.954 13 H 0.059 0.941 14 C -0.175 4.175 15 C -0.146 4.146 16 C -0.102 4.102 17 H 0.117 0.883 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.111 4.111 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.226 0.774 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.063 -13.922 -0.927 15.213 hybrid contribution 0.200 1.170 0.044 1.188 sum 6.262 -12.751 -0.883 14.233 Atomic orbital electron populations 1.70198 1.09591 1.28931 1.36655 1.27001 0.95525 1.05030 0.91176 0.85062 0.78185 0.74658 0.80297 1.17782 1.19888 1.17802 1.21438 0.94705 0.90291 1.54927 0.89538 1.18599 0.86838 0.84481 0.75840 1.90541 1.16301 1.88021 1.57286 1.45879 1.08925 1.04734 1.80585 1.21761 0.94589 0.83672 0.95398 0.94113 1.22933 1.00168 0.97139 0.97246 1.22436 0.99162 0.93252 0.99795 1.22331 0.98742 0.94026 0.95115 0.88267 1.22503 0.99922 0.98946 0.93919 1.22488 1.02101 0.93306 0.97432 1.22475 0.99998 0.97758 0.95828 1.22595 0.99167 0.94114 0.95254 0.89361 0.91635 0.77380 0.95125 0.91457 0.91853 0.89833 0.89530 0.92070 0.91097 0.90018 0.93963 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.93 11.83 21.83 0.26 -51.67 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 7 C -0.58 -33.68 9.54 24.83 0.24 -33.44 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.54 32.37 7.75 86.36 0.67 33.04 16 10 O -0.63 -44.07 14.67 -4.32 -0.06 -44.14 16 11 N -0.75 -35.05 5.15 -441.33 -2.27 -37.32 16 12 C 0.15 6.15 2.76 46.15 0.13 6.27 16 13 H 0.04 1.99 6.62 -2.39 -0.02 1.97 16 14 C -0.14 -4.98 6.60 31.98 0.21 -4.76 16 15 C -0.11 -2.87 6.35 31.64 0.20 -2.67 16 16 C -0.08 -1.92 3.74 -9.45 -0.04 -1.95 16 17 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 18 C -0.12 -2.25 6.36 31.64 0.20 -2.05 16 19 C -0.12 -2.34 6.90 31.87 0.22 -2.12 16 20 C -0.12 -3.45 6.36 31.64 0.20 -3.25 16 21 C -0.09 -2.69 3.43 -9.45 -0.03 -2.72 16 22 H 0.09 2.39 7.80 -2.38 -0.02 2.37 16 23 H 0.27 15.64 8.29 -92.71 -0.77 14.87 16 24 H 0.39 15.88 8.39 -92.71 -0.78 15.10 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 1.70 7.21 -2.39 -0.02 1.68 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.28 7.21 -2.39 -0.02 1.27 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.40 7.21 -2.38 -0.02 1.38 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -76.48 273.53 2.73 -73.75 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.31 Total: 27.13 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 2.47 Total: -11.62 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -2.02 Total: -88.99 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.06 Total: -44.14 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -76.48 2.73 -73.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707906450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.568 kcal (2) G-P(sol) polarization free energy of solvation -76.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds