Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42900 * 109.53591 * 124.42331 * 3 2 1 5 5 C 1.53117 * 109.50829 * 4.32125 * 3 2 1 6 6 C 1.53127 * 109.15989 * 297.71355 * 5 3 2 7 7 C 1.53038 * 109.27941 * 302.34585 * 6 5 3 8 8 N 1.46830 * 109.51757 * 59.17550 * 7 6 5 9 9 C 1.46901 * 110.98168 * 174.15669 * 8 7 6 10 10 C 1.53000 * 109.47158 * 294.21498 * 9 8 7 11 11 C 1.50699 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00024 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00197 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99682 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46883 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47151 * 119.99602 * 15 13 11 18 18 H 1.48500 * 109.47340 * 239.99774 * 15 13 11 19 19 C 1.46847 * 111.21086 * 298.25173 * 8 7 6 20 20 H 4.38570 * 5.43907 * 180.02562 * 4 1 2 21 21 H 0.96695 * 113.99892 * 300.09460 * 4 3 2 22 22 H 1.08997 * 109.52073 * 57.62035 * 5 3 2 23 23 H 1.09004 * 109.52347 * 177.81381 * 5 3 2 24 24 H 1.08997 * 109.50037 * 62.28538 * 6 5 3 25 25 H 1.08996 * 109.50157 * 182.36309 * 6 5 3 26 26 H 1.08995 * 109.46433 * 179.19502 * 7 6 5 27 27 H 1.09004 * 109.46142 * 299.17444 * 7 6 5 28 28 H 1.09001 * 109.46985 * 54.21857 * 9 8 7 29 29 H 1.09002 * 109.46593 * 174.21847 * 9 8 7 30 30 H 1.09002 * 109.46999 * 300.00307 * 10 9 8 31 31 H 1.08998 * 109.46977 * 59.99901 * 10 9 8 32 32 H 0.96998 * 119.99705 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.46448 * 301.73578 * 19 8 7 34 34 H 1.08994 * 109.45958 * 181.75943 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1234 0.7622 -1.1109 5 6 3.1579 -1.4383 -0.1087 6 6 2.6920 -2.2313 1.1155 7 6 3.2012 -1.5457 2.3854 8 7 2.6835 -0.1730 2.4430 9 6 3.0380 0.4699 3.7155 10 6 2.3223 -0.2437 4.8642 11 6 2.6855 0.4162 6.1694 12 1 3.3596 1.2599 6.1788 13 6 2.1579 -0.0578 7.3518 14 7 1.3374 -1.0856 7.3405 15 14 2.6086 0.7596 8.9698 16 1 3.5411 1.8862 8.7123 17 1 1.3788 1.2753 9.6233 18 1 3.2635 -0.2322 9.8600 19 6 3.1566 0.6216 1.3023 20 1 -1.0501 0.0000 0.0003 21 1 2.8376 0.4249 -1.9709 22 1 2.7611 -1.8986 -1.0136 23 1 4.2472 -1.4354 -0.1479 24 1 1.6028 -2.2670 1.1330 25 1 3.0885 -3.2453 1.0647 26 1 2.8593 -2.0999 3.2594 27 1 4.2910 -1.5226 2.3736 28 1 4.1159 0.4092 3.8653 29 1 2.7328 1.5160 3.6913 30 1 1.2444 -0.1830 4.7142 31 1 2.6274 -1.2899 4.8882 32 1 0.9659 -1.4189 8.1723 33 1 4.2465 0.6344 1.2956 34 1 2.7819 1.6414 1.3898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708117752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -0.328799 kcal Electronic energy + Delta-G solvation = -15348.365183 eV Core-core repulsion = 12861.404676 eV Total energy + Delta-G solvation = -2486.960507 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52462 -36.50301 -33.76543 -32.60127 -32.02918 -29.89146 -28.74438 -25.18590 -23.34102 -22.82226 -20.92184 -19.95962 -18.18239 -16.62523 -16.26592 -15.50571 -14.76347 -14.64677 -14.37014 -14.19419 -13.53384 -13.20278 -12.85029 -12.18918 -12.09543 -11.81287 -11.32000 -11.04515 -10.92332 -10.82462 -10.57258 -10.50101 -10.42536 -10.23247 -9.88492 -9.70301 -9.35415 -9.09098 -8.32344 -7.72274 -5.99003 -4.01173 2.92540 3.02585 3.31915 3.39300 3.43483 4.02026 4.35326 4.47209 4.75581 4.84726 4.95788 5.19271 5.37128 5.60015 5.64150 5.73000 5.81573 5.88537 5.94865 6.03963 6.16824 6.26631 6.37805 6.51445 6.53902 6.96892 7.47027 7.49362 7.59608 7.79323 7.82995 7.90644 8.09017 8.44278 9.06260 9.62453 11.12469 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045631 B = 0.005921 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.475106 B = 4727.799417 C = 4758.964921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.247 3.753 4 O -0.552 6.552 5 C -0.138 4.138 6 C -0.115 4.115 7 C 0.050 3.950 8 N -0.532 5.532 9 C 0.065 3.935 10 C 0.029 3.971 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.074 3.926 20 H 0.215 0.785 21 H 0.378 0.622 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.028 0.972 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -0.948 -15.455 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.206 3.794 4 O -0.357 6.357 5 C -0.176 4.176 6 C -0.153 4.153 7 C -0.078 4.078 8 N -0.257 5.257 9 C -0.061 4.061 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.055 4.055 20 H 0.232 0.768 21 H 0.226 0.774 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.773 -0.720 -14.892 15.014 hybrid contribution 0.534 0.100 0.569 0.787 sum 2.307 -0.620 -14.323 14.521 Atomic orbital electron populations 1.24856 0.95807 1.00261 0.99586 1.23353 0.94515 1.00448 1.00801 1.18031 0.82723 0.91003 0.87650 1.86563 1.76014 1.56726 1.16410 1.22248 1.01415 0.94487 0.99470 1.21582 1.02207 0.98066 0.93462 1.22175 0.96590 0.90377 0.98616 1.61887 1.59869 1.01764 1.02222 1.22338 0.97592 0.98417 0.87732 1.19103 0.96304 0.95359 0.90116 1.21234 1.27787 1.15374 0.91584 0.92714 1.24993 0.95106 0.95070 0.99159 1.69987 1.31557 1.24777 1.26957 0.86538 0.78260 0.79416 0.83793 1.19766 1.20992 1.21040 1.21802 0.97510 0.97863 0.88280 0.76841 0.77423 0.91612 0.90653 0.90805 0.91310 0.89050 0.95341 0.96005 0.91969 0.95680 0.96409 0.93068 0.93960 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 19.25 29.55 0.57 -2.04 16 2 C -0.19 -2.88 10.60 -37.12 -0.39 -3.27 16 3 C 0.25 3.51 1.09 -93.32 -0.10 3.41 16 4 O -0.55 -7.05 12.95 -35.23 -0.46 -7.50 16 5 C -0.14 -1.71 5.11 -26.61 -0.14 -1.85 16 6 C -0.12 -1.61 5.83 -26.65 -0.16 -1.76 16 7 C 0.05 0.86 5.29 -3.84 -0.02 0.84 16 8 N -0.53 -10.02 4.25 -234.68 -1.00 -11.02 16 9 C 0.07 1.42 4.90 -3.82 -0.02 1.40 16 10 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 11 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.07 1.22 4.52 -3.83 -0.02 1.21 16 20 H 0.21 2.23 7.80 -54.08 -0.42 1.80 16 21 H 0.38 3.20 9.03 45.56 0.41 3.61 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.75 6.21 -51.93 -0.32 1.43 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.06 1.34 7.99 -51.93 -0.41 0.93 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -31.69 283.27 -6.67 -38.36 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.38 Total: 0.48 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.82 Total: -15.07 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.26 Total: -37.30 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.46 Total: -7.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.69 -6.67 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708117752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.035 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds