Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42900 * 109.53591 * 124.42331 * 3 2 1 5 5 C 1.53117 * 109.50829 * 4.32125 * 3 2 1 6 6 C 1.53127 * 109.15989 * 297.71355 * 5 3 2 7 7 C 1.53038 * 109.27941 * 302.34585 * 6 5 3 8 8 N 1.46830 * 109.51757 * 59.17550 * 7 6 5 9 9 C 1.46901 * 110.98168 * 174.15669 * 8 7 6 10 10 C 1.53000 * 109.47158 * 294.21498 * 9 8 7 11 11 C 1.50699 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00024 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00197 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99682 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46883 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47151 * 119.99602 * 15 13 11 18 18 H 1.48500 * 109.47340 * 239.99774 * 15 13 11 19 19 C 1.46847 * 111.21086 * 298.25173 * 8 7 6 20 20 H 4.38570 * 5.43907 * 180.02562 * 4 1 2 21 21 H 0.96695 * 113.99892 * 300.09460 * 4 3 2 22 22 H 1.08997 * 109.52073 * 57.62035 * 5 3 2 23 23 H 1.09004 * 109.52347 * 177.81381 * 5 3 2 24 24 H 1.08997 * 109.50037 * 62.28538 * 6 5 3 25 25 H 1.08996 * 109.50157 * 182.36309 * 6 5 3 26 26 H 1.08995 * 109.46433 * 179.19502 * 7 6 5 27 27 H 1.09004 * 109.46142 * 299.17444 * 7 6 5 28 28 H 1.09001 * 109.46985 * 54.21857 * 9 8 7 29 29 H 1.09002 * 109.46593 * 174.21847 * 9 8 7 30 30 H 1.09002 * 109.46999 * 300.00307 * 10 9 8 31 31 H 1.08998 * 109.46977 * 59.99901 * 10 9 8 32 32 H 0.96998 * 119.99705 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.46448 * 301.73578 * 19 8 7 34 34 H 1.08994 * 109.45958 * 181.75943 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1234 0.7622 -1.1109 5 6 3.1579 -1.4383 -0.1087 6 6 2.6920 -2.2313 1.1155 7 6 3.2012 -1.5457 2.3854 8 7 2.6835 -0.1730 2.4430 9 6 3.0380 0.4699 3.7155 10 6 2.3223 -0.2437 4.8642 11 6 2.6855 0.4162 6.1694 12 1 3.3596 1.2599 6.1788 13 6 2.1579 -0.0578 7.3518 14 7 1.3374 -1.0856 7.3405 15 14 2.6086 0.7596 8.9698 16 1 3.5411 1.8862 8.7123 17 1 1.3788 1.2753 9.6233 18 1 3.2635 -0.2322 9.8600 19 6 3.1566 0.6216 1.3023 20 1 -1.0501 0.0000 0.0003 21 1 2.8376 0.4249 -1.9709 22 1 2.7611 -1.8986 -1.0136 23 1 4.2472 -1.4354 -0.1479 24 1 1.6028 -2.2670 1.1330 25 1 3.0885 -3.2453 1.0647 26 1 2.8593 -2.0999 3.2594 27 1 4.2910 -1.5226 2.3736 28 1 4.1159 0.4092 3.8653 29 1 2.7328 1.5160 3.6913 30 1 1.2444 -0.1830 4.7142 31 1 2.6274 -1.2899 4.8882 32 1 0.9659 -1.4189 8.1723 33 1 4.2465 0.6344 1.2956 34 1 2.7819 1.6414 1.3898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708117752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -23.275942 kcal Electronic energy + Delta-G solvation = -15349.360246 eV Core-core repulsion = 12861.404676 eV Total energy + Delta-G solvation = -2487.955570 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73711 -37.79803 -35.49509 -34.20708 -33.22811 -31.51865 -30.21607 -26.96990 -24.86326 -24.16240 -22.36799 -21.50478 -19.31213 -18.56762 -17.55471 -16.74885 -16.56300 -16.09038 -15.68614 -15.65762 -14.89249 -14.50942 -14.38226 -14.08257 -13.55804 -13.24494 -12.92446 -12.83252 -12.46194 -12.31575 -12.08007 -11.80534 -11.70718 -11.61510 -11.36054 -11.27692 -11.22772 -10.78011 -10.54433 -9.22201 -8.20775 -6.32008 1.40069 1.40634 1.53984 1.84123 1.91412 2.39554 2.78815 3.12736 3.32868 3.54327 3.75187 3.83176 4.07118 4.31537 4.42260 4.48324 4.53132 4.62870 4.68933 4.76916 4.92580 4.95318 5.02654 5.10736 5.14995 5.34160 5.45125 5.65065 5.77050 6.07872 6.22833 6.31132 6.72534 6.74780 6.84949 7.37076 8.91687 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045631 B = 0.005921 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.475106 B = 4727.799417 C = 4758.964921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.224 4.224 3 C 0.251 3.749 4 O -0.558 6.558 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.048 3.952 8 N -0.542 5.542 9 C 0.081 3.919 10 C 0.039 3.961 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.276 1.276 19 C 0.072 3.928 20 H 0.241 0.759 21 H 0.398 0.602 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.025 0.975 29 H 0.060 0.940 30 H -0.010 1.010 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -0.698 -16.324 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.224 4.224 3 C 0.210 3.790 4 O -0.366 6.366 5 C -0.168 4.168 6 C -0.146 4.146 7 C -0.079 4.079 8 N -0.268 5.268 9 C -0.046 4.046 10 C 0.002 3.998 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.056 4.056 20 H 0.257 0.743 21 H 0.249 0.751 22 H 0.111 0.889 23 H 0.105 0.895 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.504 -0.472 -15.799 16.003 hybrid contribution 0.261 0.015 0.789 0.831 sum 2.765 -0.458 -15.010 15.269 Atomic orbital electron populations 1.25655 0.96804 0.99305 0.98531 1.23813 0.95364 1.01418 1.01823 1.17866 0.82370 0.91866 0.86924 1.86510 1.75969 1.56902 1.17205 1.22217 1.02137 0.92937 0.99523 1.21533 1.01276 0.99304 0.92511 1.22198 0.97110 0.89297 0.99320 1.61768 1.60629 1.02698 1.01731 1.21970 0.96925 0.97751 0.87988 1.18902 0.94453 0.94757 0.91723 1.21649 1.28089 1.15751 0.92814 0.92237 1.25958 0.94784 0.95583 1.03277 1.70119 1.32561 1.26218 1.28255 0.85370 0.78245 0.78605 0.78636 1.18637 1.20360 1.20200 1.21807 0.97928 0.97146 0.88739 0.74295 0.75098 0.88926 0.89459 0.92285 0.88828 0.92086 0.94422 0.95696 0.92190 0.99158 0.98327 0.92727 0.93236 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.92 19.25 74.32 1.43 -3.49 16 2 C -0.22 -6.46 10.60 31.13 0.33 -6.13 16 3 C 0.25 6.70 1.09 -12.54 -0.01 6.69 16 4 O -0.56 -12.91 12.95 -148.98 -1.93 -14.84 16 5 C -0.13 -2.87 5.11 30.68 0.16 -2.71 16 6 C -0.11 -2.86 5.83 30.65 0.18 -2.68 16 7 C 0.05 1.66 5.29 86.33 0.46 2.12 16 8 N -0.54 -20.65 4.25 -896.39 -3.81 -24.46 16 9 C 0.08 3.58 4.90 86.30 0.42 4.00 16 10 C 0.04 2.14 4.90 29.85 0.15 2.28 16 11 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 15 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 C 0.07 2.33 4.52 86.33 0.39 2.72 16 20 H 0.24 4.55 7.80 -4.41 -0.03 4.51 16 21 H 0.40 5.58 9.03 -74.06 -0.67 4.91 16 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 24 H 0.06 1.74 7.36 -2.39 -0.02 1.72 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.44 6.21 -2.39 -0.01 2.42 16 27 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.02 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.06 2.64 7.99 -2.39 -0.02 2.62 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.00 -0.09 6.43 -2.39 -0.02 -0.10 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 2.34 8.01 -2.39 -0.02 2.33 16 Total: -1.00 -68.79 283.27 1.17 -67.62 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.40 Total: 10.12 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.19 Total: -28.07 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.53 Total: -81.61 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.93 Total: -14.84 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.79 1.17 -67.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708117752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -68.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds