Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42898 * 109.52230 * 10.13696 * 3 2 1 5 5 C 1.53117 * 109.52185 * 249.94464 * 3 2 1 6 6 C 1.53037 * 109.27832 * 297.74706 * 5 3 2 7 7 N 1.46850 * 109.52602 * 300.82658 * 6 5 3 8 8 C 1.46899 * 110.99956 * 185.83813 * 7 6 5 9 9 C 1.53001 * 109.47297 * 45.78803 * 8 7 6 10 10 C 1.50698 * 109.47098 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00324 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99874 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99975 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99899 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47334 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46990 * 120.00156 * 14 12 10 17 17 H 1.48496 * 109.47493 * 240.00008 * 14 12 10 18 18 C 1.46844 * 111.19719 * 61.73997 * 7 6 5 19 19 C 1.53045 * 109.52282 * 298.25606 * 18 7 6 20 20 H 4.38543 * 5.43990 * 179.97438 * 4 1 2 21 21 H 0.96705 * 114.00100 * 299.99488 * 4 3 2 22 22 H 1.08999 * 109.50775 * 57.69066 * 5 3 2 23 23 H 1.08999 * 109.49915 * 177.81184 * 5 3 2 24 24 H 1.09002 * 109.46582 * 180.80855 * 6 5 3 25 25 H 1.09009 * 109.46229 * 60.84064 * 6 5 3 26 26 H 1.09004 * 109.46900 * 165.79088 * 8 7 6 27 27 H 1.09005 * 109.47347 * 285.78679 * 8 7 6 28 28 H 1.08996 * 109.46758 * 300.00038 * 9 8 7 29 29 H 1.09005 * 109.47024 * 59.99678 * 9 8 7 30 30 H 0.96997 * 119.99841 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.45864 * 178.24539 * 18 7 6 32 32 H 1.08998 * 109.45986 * 58.27130 * 18 7 6 33 33 H 1.08993 * 109.50173 * 299.24325 * 19 18 7 34 34 H 1.08997 * 109.49927 * 179.12005 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1241 -1.3249 -0.2370 5 6 3.1574 0.4958 1.3556 6 6 2.6917 1.9369 1.5757 7 7 3.2071 2.7894 0.4967 8 6 2.8964 4.2029 0.7486 9 6 3.2218 4.5452 2.2039 10 6 2.9036 5.9953 2.4621 11 1 2.5091 6.6114 1.6676 12 6 3.1161 6.5357 3.7127 13 7 3.5969 5.7856 4.6800 14 14 2.7223 8.3335 4.0325 15 1 2.1978 8.9541 2.7896 16 1 1.6995 8.4330 5.1046 17 1 3.9558 9.0424 4.4579 18 6 2.6914 2.3619 -0.8100 19 6 3.1572 0.9335 -1.1013 20 1 -1.0498 -0.0004 0.0001 21 1 2.8396 -1.9700 0.4249 22 1 2.7618 -0.1395 2.1481 23 1 4.2467 0.4594 1.3689 24 1 3.0663 2.2974 2.5337 25 1 1.6022 1.9704 1.5760 26 1 3.4929 4.8297 0.0857 27 1 1.8374 4.3810 0.5616 28 1 2.6253 3.9183 2.8667 29 1 4.2808 4.3670 2.3910 30 1 3.7461 6.1657 5.5599 31 1 3.0659 3.0311 -1.5847 32 1 1.6020 2.3934 -0.7984 33 1 4.2465 0.9040 -1.1266 34 1 2.7613 0.6109 -2.0643 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708138699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = -21.901901 kcal Electronic energy + Delta-G solvation = -15339.338565 eV Core-core repulsion = 12851.442577 eV Total energy + Delta-G solvation = -2487.895987 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79348 -37.95317 -35.44129 -34.13416 -32.80817 -32.01076 -30.47167 -26.74086 -24.95671 -24.27367 -22.36385 -21.39405 -19.21923 -18.67161 -17.67831 -16.74845 -16.57079 -16.07969 -15.89098 -15.48736 -15.17506 -14.63198 -14.26150 -13.92483 -13.28463 -13.16094 -12.97114 -12.74435 -12.43746 -12.31741 -12.27151 -11.99017 -11.85628 -11.57161 -11.53602 -11.32090 -11.23555 -10.77145 -10.53591 -9.22695 -8.21220 -6.32212 1.40069 1.40582 1.53800 1.71416 1.77417 2.39808 2.98154 3.12444 3.22541 3.30547 3.73862 3.79755 4.13108 4.30793 4.38847 4.48952 4.56240 4.58952 4.75062 4.83404 4.84848 4.94327 5.01578 5.05151 5.09852 5.24855 5.44197 5.64494 5.76916 6.05079 6.25639 6.30787 6.57514 6.69304 6.84217 7.36902 8.91022 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049600 B = 0.005759 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.381158 B = 4860.972974 C = 4910.756276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.244 4.244 3 C 0.246 3.754 4 O -0.554 6.554 5 C -0.127 4.127 6 C 0.057 3.943 7 N -0.544 5.544 8 C 0.077 3.923 9 C 0.029 3.971 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.058 3.942 19 C -0.093 4.093 20 H 0.247 0.753 21 H 0.394 0.606 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.018 0.982 28 H 0.001 0.999 29 H -0.004 1.004 30 H 0.264 0.736 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 -11.740 -9.293 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.244 4.244 3 C 0.205 3.795 4 O -0.363 6.363 5 C -0.165 4.165 6 C -0.071 4.071 7 N -0.269 5.269 8 C -0.050 4.050 9 C -0.008 4.008 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.070 4.070 19 C -0.130 4.130 20 H 0.263 0.737 21 H 0.244 0.756 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.437 -11.505 -9.655 15.408 hybrid contribution -1.431 0.763 1.135 1.980 sum -4.869 -10.742 -8.519 14.549 Atomic orbital electron populations 1.25809 0.96824 0.97481 0.99117 1.24161 0.95714 1.02709 1.01860 1.18028 0.81908 0.83880 0.95640 1.86554 1.76158 1.18083 1.55464 1.22224 1.02645 0.95171 0.96501 1.22028 0.96480 0.92943 0.95621 1.62063 1.59620 1.02886 1.02345 1.21995 0.97270 0.87344 0.98380 1.19072 0.95298 0.95143 0.91262 1.21646 1.43104 0.96865 0.96666 0.92251 1.25944 0.94820 1.02865 0.95943 1.70102 1.46017 1.38002 1.02990 0.85382 0.77988 0.79161 0.78401 1.18633 1.20363 1.20291 1.22104 0.97053 0.96267 0.91576 1.21484 1.02522 0.91771 0.97265 0.73657 0.75603 0.89751 0.89515 0.91485 0.96047 0.91391 0.96385 0.98106 0.98605 0.92723 0.89120 0.95454 0.89427 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 19.25 74.32 1.43 -2.51 16 2 C -0.24 -6.37 9.85 31.13 0.31 -6.07 16 3 C 0.25 6.41 1.10 -12.52 -0.01 6.40 16 4 O -0.55 -12.79 12.96 -148.98 -1.93 -14.72 16 5 C -0.13 -3.61 5.20 30.65 0.16 -3.46 16 6 C 0.06 2.09 4.64 86.33 0.40 2.49 16 7 N -0.54 -20.23 4.81 -896.32 -4.31 -24.54 16 8 C 0.08 3.36 5.21 86.30 0.45 3.80 16 9 C 0.03 1.58 4.22 29.85 0.13 1.71 16 10 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 14 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 15 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.06 1.74 5.22 86.33 0.45 2.19 16 19 C -0.09 -2.43 5.23 30.65 0.16 -2.27 16 20 H 0.25 3.52 7.80 -4.43 -0.03 3.49 16 21 H 0.39 6.05 9.03 -74.05 -0.67 5.38 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.07 2.84 5.81 -2.39 -0.01 2.83 16 25 H 0.02 0.80 7.31 -2.38 -0.02 0.78 16 26 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 27 H 0.02 0.78 8.08 -2.38 -0.02 0.76 16 28 H 0.00 0.04 6.21 -2.39 -0.01 0.03 16 29 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 32 H 0.03 0.85 7.31 -2.39 -0.02 0.83 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.88 280.98 0.64 -66.24 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.41 Total: 11.28 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 4.17 Total: -28.16 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -4.02 Total: -81.00 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.93 Total: -14.72 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.88 0.64 -66.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708138699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.335 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds