Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 110.64794 * 335.69715 * 3 2 1 5 5 C 1.54593 * 110.72114 * 212.54135 * 3 2 1 6 6 C 1.53988 * 105.14433 * 263.59891 * 5 3 2 7 7 N 1.47898 * 107.05866 * 1.22956 * 6 5 3 8 8 C 1.46904 * 111.00350 * 214.15521 * 7 6 5 9 9 C 1.52999 * 109.47548 * 175.70609 * 8 7 6 10 10 C 1.52994 * 109.47318 * 174.85581 * 9 8 7 11 11 C 1.50698 * 109.47072 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00131 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00019 * 359.72696 * 13 11 10 15 15 Si 1.86797 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47232 * 179.72527 * 15 13 11 17 17 H 1.48505 * 109.47082 * 299.72558 * 15 13 11 18 18 H 1.48499 * 109.47000 * 59.72496 * 15 13 11 19 19 C 1.48539 * 105.81716 * 334.66506 * 7 6 5 20 20 H 4.40754 * 5.34125 * 180.02562 * 4 1 2 21 21 H 0.96697 * 113.99779 * 298.30123 * 4 3 2 22 22 H 1.09006 * 110.31026 * 144.68348 * 5 3 2 23 23 H 1.09006 * 110.31080 * 22.52190 * 5 3 2 24 24 H 1.09000 * 109.92036 * 241.87438 * 6 5 3 25 25 H 1.09001 * 109.91735 * 120.57946 * 6 5 3 26 26 H 1.09000 * 109.46917 * 55.70032 * 8 7 6 27 27 H 1.09002 * 109.46529 * 295.70824 * 8 7 6 28 28 H 1.09005 * 109.46699 * 54.85803 * 9 8 7 29 29 H 1.08993 * 109.46931 * 294.85987 * 9 8 7 30 30 H 1.09000 * 109.46973 * 59.99705 * 10 9 8 31 31 H 1.09005 * 109.47061 * 300.00254 * 10 9 8 32 32 H 0.97005 * 120.00019 * 0.27253 * 14 13 11 33 33 H 1.09003 * 110.66378 * 157.64390 * 19 7 6 34 34 H 1.08998 * 110.66548 * 280.77086 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1504 -1.2178 0.5503 5 6 3.1924 1.2198 0.7778 6 6 3.4893 2.2823 -0.2966 7 7 3.1008 1.7015 -1.6001 8 6 3.9933 2.1661 -2.6705 9 6 3.6284 1.4637 -3.9798 10 6 4.4706 2.0398 -5.1197 11 6 4.1116 1.3475 -6.4091 12 1 3.3578 0.5742 -6.4151 13 6 4.7455 1.7013 -7.5813 14 7 5.6597 2.6467 -7.5750 15 14 4.3000 0.8436 -9.1798 16 1 5.1133 1.4070 -10.2872 17 1 4.5742 -0.6105 -9.0544 18 1 2.8584 1.0525 -9.4685 19 6 3.1942 0.2287 -1.4311 20 1 -1.0498 -0.0004 0.0000 21 1 2.8972 -1.3678 1.4714 22 1 4.1066 0.9519 1.3076 23 1 2.4429 1.5889 1.4780 24 1 4.5527 2.5213 -0.2987 25 1 2.9043 3.1811 -0.1015 26 1 5.0257 1.9340 -2.4090 27 1 3.8831 3.2436 -2.7932 28 1 2.5711 1.6207 -4.1939 29 1 3.8254 0.3958 -3.8863 30 1 5.5278 1.8829 -4.9055 31 1 4.2735 3.1079 -5.2131 32 1 5.8908 3.0924 -6.7450 33 1 2.5737 -0.2830 -2.1669 34 1 4.2303 -0.1019 -1.5035 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708140914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -3.170301 kcal Electronic energy + Delta-G solvation = -14937.038627 eV Core-core repulsion = 12449.954903 eV Total energy + Delta-G solvation = -2487.083724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70404 -36.57320 -34.27798 -32.94974 -31.94282 -29.56924 -28.59573 -25.71139 -23.13204 -22.17959 -21.13678 -20.21582 -18.83175 -16.97949 -16.45602 -15.91786 -15.47166 -14.63207 -14.16325 -13.74286 -13.62914 -13.22905 -13.03856 -12.66112 -12.14901 -11.72935 -11.60449 -11.22326 -11.17803 -10.82913 -10.68635 -10.57970 -10.51706 -10.11561 -10.08497 -9.79896 -9.68835 -8.49562 -8.30699 -8.27789 -6.31827 -4.00138 2.62436 2.67979 3.47237 3.49521 3.68075 3.80205 4.06014 4.31243 4.49730 4.59155 4.71236 4.98107 5.40187 5.45413 5.49584 5.58226 5.59289 5.66790 5.69536 5.87341 5.95657 6.02402 6.18440 6.52623 6.64244 6.87837 7.06684 7.18711 7.36060 7.45833 7.50215 7.59434 8.27672 8.51541 8.93559 9.71945 11.08914 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.005201 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.679555 B = 5382.743129 C = 5674.783984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.197 4.197 3 C 0.234 3.766 4 O -0.542 6.542 5 C -0.151 4.151 6 C 0.036 3.964 7 N -0.512 5.512 8 C 0.047 3.953 9 C -0.101 4.101 10 C 0.009 3.991 11 C -0.600 4.600 12 H 0.048 0.952 13 C 0.013 3.987 14 N -0.915 5.915 15 Si 1.069 2.931 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.288 1.288 19 C 0.059 3.941 20 H 0.219 0.781 21 H 0.380 0.620 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.093 0.907 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -3.591 18.172 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.193 3.807 4 O -0.347 6.347 5 C -0.189 4.189 6 C -0.093 4.093 7 N -0.237 5.237 8 C -0.080 4.080 9 C -0.139 4.139 10 C -0.028 4.028 11 C -0.638 4.638 12 H 0.066 0.934 13 C -0.190 4.190 14 N -0.551 5.551 15 Si 0.897 3.103 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.069 4.069 20 H 0.235 0.765 21 H 0.227 0.773 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.290 -3.529 15.802 17.370 hybrid contribution -0.014 -0.066 2.465 2.466 sum -6.304 -3.595 18.266 19.655 Atomic orbital electron populations 1.24927 0.95821 0.99187 0.99798 1.23263 0.94352 1.01086 1.01024 1.18746 0.82596 0.84274 0.95110 1.86619 1.76077 1.40186 1.31865 1.23123 1.01787 0.95441 0.98566 1.22816 0.99681 0.97837 0.88924 1.64859 1.50827 1.04142 1.03893 1.22521 0.92997 1.00601 0.91866 1.21546 1.01039 0.98701 0.92604 1.19198 0.94426 0.95929 0.93294 1.22056 1.24792 1.23024 0.93948 0.93350 1.25858 0.94123 0.96478 1.02533 1.70784 1.30383 1.23140 1.30810 0.83547 0.75895 0.75472 0.75367 1.20788 1.21474 1.21442 1.23056 1.00766 0.90191 0.92907 0.76464 0.77254 0.89711 0.90433 0.93179 0.90126 0.94953 0.90680 0.92274 0.93277 0.97689 0.97429 0.92187 0.88819 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.20 -2.59 12.08 -37.12 -0.45 -3.04 16 3 C 0.23 3.01 1.30 -91.55 -0.12 2.89 16 4 O -0.54 -6.41 13.08 -35.23 -0.46 -6.87 16 5 C -0.15 -1.62 6.23 -25.38 -0.16 -1.78 16 6 C 0.04 0.45 6.70 -2.76 -0.02 0.43 16 7 N -0.51 -8.12 5.30 -230.45 -1.22 -9.34 16 8 C 0.05 0.85 4.84 -3.82 -0.02 0.83 16 9 C -0.10 -2.19 4.83 -26.73 -0.13 -2.32 16 10 C 0.01 0.24 4.28 -27.89 -0.12 0.12 16 11 C -0.60 -17.68 9.11 -34.44 -0.31 -18.00 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 14 N -0.91 -28.67 13.65 55.43 0.76 -27.92 16 15 Si 1.07 25.93 29.90 -169.99 -5.08 20.85 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.06 0.91 4.52 -1.89 -0.01 0.90 16 20 H 0.22 1.67 7.80 -54.10 -0.42 1.25 16 21 H 0.38 2.75 9.09 45.56 0.41 3.17 16 22 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 23 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 24 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.57 7.97 -51.93 -0.41 0.15 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.05 1.06 7.18 -51.93 -0.37 0.69 16 30 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 31 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 32 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 33 H 0.09 1.56 7.66 -51.93 -0.40 1.17 16 34 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -33.27 288.56 -6.95 -40.22 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.43 Total: -0.12 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.86 Total: -21.17 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.46 Total: -37.26 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.46 Total: -6.87 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.27 -6.95 -40.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708140914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.050 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds