Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 110.64794 * 335.69715 * 3 2 1 5 5 C 1.54593 * 110.72114 * 212.54135 * 3 2 1 6 6 C 1.53988 * 105.14433 * 263.59891 * 5 3 2 7 7 N 1.47898 * 107.05866 * 1.22956 * 6 5 3 8 8 C 1.46904 * 111.00350 * 214.15521 * 7 6 5 9 9 C 1.52999 * 109.47548 * 175.70609 * 8 7 6 10 10 C 1.52994 * 109.47318 * 174.85581 * 9 8 7 11 11 C 1.50698 * 109.47072 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00131 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00019 * 359.72696 * 13 11 10 15 15 Si 1.86797 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47232 * 179.72527 * 15 13 11 17 17 H 1.48505 * 109.47082 * 299.72558 * 15 13 11 18 18 H 1.48499 * 109.47000 * 59.72496 * 15 13 11 19 19 C 1.48539 * 105.81716 * 334.66506 * 7 6 5 20 20 H 4.40754 * 5.34125 * 180.02562 * 4 1 2 21 21 H 0.96697 * 113.99779 * 298.30123 * 4 3 2 22 22 H 1.09006 * 110.31026 * 144.68348 * 5 3 2 23 23 H 1.09006 * 110.31080 * 22.52190 * 5 3 2 24 24 H 1.09000 * 109.92036 * 241.87438 * 6 5 3 25 25 H 1.09001 * 109.91735 * 120.57946 * 6 5 3 26 26 H 1.09000 * 109.46917 * 55.70032 * 8 7 6 27 27 H 1.09002 * 109.46529 * 295.70824 * 8 7 6 28 28 H 1.09005 * 109.46699 * 54.85803 * 9 8 7 29 29 H 1.08993 * 109.46931 * 294.85987 * 9 8 7 30 30 H 1.09000 * 109.46973 * 59.99705 * 10 9 8 31 31 H 1.09005 * 109.47061 * 300.00254 * 10 9 8 32 32 H 0.97005 * 120.00019 * 0.27253 * 14 13 11 33 33 H 1.09003 * 110.66378 * 157.64390 * 19 7 6 34 34 H 1.08998 * 110.66548 * 280.77086 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1504 -1.2178 0.5503 5 6 3.1924 1.2198 0.7778 6 6 3.4893 2.2823 -0.2966 7 7 3.1008 1.7015 -1.6001 8 6 3.9933 2.1661 -2.6705 9 6 3.6284 1.4637 -3.9798 10 6 4.4706 2.0398 -5.1197 11 6 4.1116 1.3475 -6.4091 12 1 3.3578 0.5742 -6.4151 13 6 4.7455 1.7013 -7.5813 14 7 5.6597 2.6467 -7.5750 15 14 4.3000 0.8436 -9.1798 16 1 5.1133 1.4070 -10.2872 17 1 4.5742 -0.6105 -9.0544 18 1 2.8584 1.0525 -9.4685 19 6 3.1942 0.2287 -1.4311 20 1 -1.0498 -0.0004 0.0000 21 1 2.8972 -1.3678 1.4714 22 1 4.1066 0.9519 1.3076 23 1 2.4429 1.5889 1.4780 24 1 4.5527 2.5213 -0.2987 25 1 2.9043 3.1811 -0.1015 26 1 5.0257 1.9340 -2.4090 27 1 3.8831 3.2436 -2.7932 28 1 2.5711 1.6207 -4.1939 29 1 3.8254 0.3958 -3.8863 30 1 5.5278 1.8829 -4.9055 31 1 4.2735 3.1079 -5.2131 32 1 5.8908 3.0924 -6.7450 33 1 2.5737 -0.2830 -2.1669 34 1 4.2303 -0.1019 -1.5035 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708140914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -27.933105 kcal Electronic energy + Delta-G solvation = -14938.112423 eV Core-core repulsion = 12449.954903 eV Total energy + Delta-G solvation = -2488.157520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76904 -37.74716 -36.14991 -34.23155 -33.38264 -31.03557 -29.67640 -27.53090 -24.89417 -23.50288 -22.32738 -21.78026 -19.81259 -18.97981 -17.65990 -17.01164 -16.59443 -15.99652 -15.65927 -15.39262 -15.15590 -14.55199 -14.36869 -14.25827 -13.57569 -13.37933 -12.94023 -12.69359 -12.53697 -12.32774 -11.98514 -11.94438 -11.75205 -11.73266 -11.58646 -11.49399 -11.02609 -10.68452 -10.55570 -9.54181 -8.70994 -6.41114 1.51624 1.60413 1.72468 1.75403 1.80192 2.55535 2.70944 3.14133 3.19626 3.31474 3.50688 3.72783 4.05038 4.08484 4.18799 4.39770 4.51613 4.53825 4.58210 4.72067 4.76037 4.82129 4.88713 4.92636 5.03386 5.11191 5.37377 5.46930 5.76227 5.86463 6.01091 6.16581 6.56492 6.61289 6.66590 7.40613 8.70108 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.005201 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.679555 B = 5382.743129 C = 5674.783984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.240 4.240 3 C 0.239 3.761 4 O -0.554 6.554 5 C -0.139 4.139 6 C 0.031 3.969 7 N -0.521 5.521 8 C 0.060 3.940 9 C -0.086 4.086 10 C 0.010 3.990 11 C -0.622 4.622 12 H 0.047 0.953 13 C -0.039 4.039 14 N -0.937 5.937 15 Si 1.118 2.882 16 H -0.281 1.281 17 H -0.269 1.269 18 H -0.269 1.269 19 C 0.053 3.947 20 H 0.250 0.750 21 H 0.400 0.600 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.045 0.955 30 H -0.010 1.010 31 H -0.008 1.008 32 H 0.255 0.745 33 H 0.072 0.928 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -4.166 19.242 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.241 4.241 3 C 0.197 3.803 4 O -0.363 6.363 5 C -0.177 4.177 6 C -0.097 4.097 7 N -0.246 5.246 8 C -0.068 4.068 9 C -0.124 4.124 10 C -0.027 4.027 11 C -0.660 4.660 12 H 0.066 0.934 13 C -0.236 4.236 14 N -0.574 5.574 15 Si 0.939 3.061 16 H -0.206 1.206 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.075 4.075 20 H 0.267 0.733 21 H 0.251 0.749 22 H 0.120 0.880 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.406 -4.106 16.927 18.927 hybrid contribution 0.292 0.101 2.185 2.207 sum -7.114 -4.006 19.112 20.783 Atomic orbital electron populations 1.25793 0.96725 0.97577 0.97953 1.23601 0.95053 1.02692 1.02734 1.18540 0.82739 0.85389 0.93628 1.86562 1.76201 1.39866 1.33643 1.23084 1.03010 0.93701 0.97931 1.22950 1.00307 0.98723 0.87676 1.64774 1.50245 1.04608 1.04952 1.22248 0.93544 1.00100 0.90931 1.21295 0.99383 0.98565 0.93129 1.19137 0.94272 0.94984 0.94333 1.22498 1.24797 1.23213 0.95464 0.93424 1.27482 0.93284 0.96288 1.06533 1.70919 1.31832 1.24439 1.30195 0.82929 0.76662 0.75343 0.71174 1.20587 1.19439 1.19412 1.23001 1.00020 0.89776 0.94742 0.73342 0.74947 0.87976 0.88701 0.92548 0.89118 0.94690 0.90559 0.93160 0.93602 0.99206 0.98964 0.93545 0.90955 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 19.25 74.32 1.43 -1.95 16 2 C -0.24 -5.93 12.08 31.13 0.38 -5.55 16 3 C 0.24 5.80 1.30 -11.39 -0.01 5.78 16 4 O -0.55 -12.26 13.08 -148.98 -1.95 -14.21 16 5 C -0.14 -2.65 6.23 31.47 0.20 -2.45 16 6 C 0.03 0.72 6.70 86.44 0.58 1.30 16 7 N -0.52 -16.17 5.30 -883.01 -4.68 -20.85 16 8 C 0.06 2.14 4.84 86.30 0.42 2.56 16 9 C -0.09 -3.79 4.83 30.59 0.15 -3.64 16 10 C 0.01 0.56 4.28 29.85 0.13 0.69 16 11 C -0.62 -37.17 9.11 25.60 0.23 -36.94 16 12 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 13 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 14 N -0.94 -59.57 13.65 21.45 0.29 -59.28 16 15 Si 1.12 51.64 29.90 68.60 2.05 53.69 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 C 0.05 1.62 4.52 86.65 0.39 2.01 16 20 H 0.25 3.00 7.80 -4.43 -0.03 2.97 16 21 H 0.40 4.96 9.09 -74.06 -0.67 4.29 16 22 H 0.10 1.59 8.08 -2.38 -0.02 1.57 16 23 H 0.09 1.50 7.84 -2.38 -0.02 1.48 16 24 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.03 1.23 7.97 -2.39 -0.02 1.21 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.05 2.02 7.18 -2.39 -0.02 2.01 16 30 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 31 H -0.01 -0.45 8.00 -2.38 -0.02 -0.47 16 32 H 0.26 16.39 7.22 -92.70 -0.67 15.72 16 33 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 34 H 0.06 1.76 8.01 -2.39 -0.02 1.74 16 Total: -1.00 -71.76 288.56 0.56 -71.20 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.49 Total: 9.49 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 4.35 Total: -40.04 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -4.39 Total: -80.13 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.95 Total: -14.21 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -71.76 0.56 -71.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708140914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.269 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds