Wall clock time and date at job start Mon Mar 30 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47082 * 269.99727 * 3 2 1 5 5 H 1.48502 * 109.47068 * 29.99970 * 3 2 1 6 6 H 1.48503 * 109.46939 * 149.99744 * 3 2 1 7 7 C 1.37880 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99755 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99940 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.15551 * 54.54154 * 9 7 2 11 11 C 1.51777 * 109.19456 * 295.23452 * 9 7 2 12 12 C 1.51797 * 113.80927 * 172.63860 * 11 9 7 13 13 C 1.53064 * 110.74504 * 66.80763 * 12 11 9 14 14 C 1.51421 * 108.49206 * 275.08479 * 13 12 11 15 15 O 1.21277 * 119.88883 * 251.20646 * 14 13 12 16 16 N 1.33371 * 120.22060 * 71.23352 * 14 13 12 17 17 C 1.47202 * 120.42426 * 0.28133 * 16 14 13 18 18 H 1.09000 * 109.60346 * 47.96470 * 17 16 14 19 19 C 1.52998 * 109.59993 * 168.29132 * 17 16 14 20 20 C 1.53006 * 117.49994 * 305.05946 * 19 17 16 21 21 C 1.53000 * 59.99897 * 107.49539 * 20 19 17 22 22 H 0.97003 * 120.00398 * 0.02562 * 1 2 3 23 23 H 1.08996 * 108.61825 * 51.51597 * 11 9 7 24 24 H 1.09007 * 108.50522 * 293.67328 * 11 9 7 25 25 H 1.08999 * 109.22052 * 306.48349 * 12 11 9 26 26 H 1.09002 * 109.22251 * 187.13028 * 12 11 9 27 27 H 1.08996 * 109.63137 * 155.38145 * 13 12 11 28 28 H 1.09004 * 109.79494 * 34.88634 * 13 12 11 29 29 H 0.96998 * 119.78623 * 180.26199 * 16 14 13 30 30 H 1.08998 * 115.56133 * 159.37425 * 19 17 16 31 31 H 1.08997 * 117.49479 * 0.02562 * 20 19 17 32 32 H 1.08996 * 117.49580 * 214.98066 * 20 19 17 33 33 H 1.08999 * 117.50418 * 107.48881 * 21 20 19 34 34 H 1.09006 * 117.49933 * 252.51577 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8688 -0.5965 0.8398 11 6 4.0110 -0.5832 -1.2954 12 6 5.5132 -0.3685 -1.3329 13 6 6.2526 -1.7087 -1.3319 14 6 6.4061 -2.1714 0.1016 15 8 7.4983 -2.1543 0.6285 16 7 5.3444 -2.5983 0.7866 17 6 4.0144 -2.6305 0.1565 18 1 4.0851 -3.1038 -0.8228 19 6 3.0468 -3.4204 1.0400 20 6 3.4477 -4.8450 1.4287 21 6 3.4880 -3.7271 2.4725 22 1 -0.4851 0.8400 -0.0004 23 1 3.5183 0.3784 -1.4396 24 1 3.7331 -1.2423 -2.1180 25 1 5.8151 0.2086 -0.4589 26 1 5.7743 0.1847 -2.2351 27 1 7.2365 -1.5844 -1.7841 28 1 5.6810 -2.4460 -1.8957 29 1 5.4493 -2.8898 1.7058 30 1 1.9882 -3.2240 0.8706 31 1 4.4009 -5.2191 1.0553 32 1 2.6526 -5.5856 1.5150 33 1 2.7196 -3.7323 3.2456 34 1 4.4677 -3.3659 2.7856 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709950156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:35 Heat of formation + Delta-G solvation = -10.068206 kcal Electronic energy + Delta-G solvation = -16193.562502 eV Core-core repulsion = 13706.179662 eV Total energy + Delta-G solvation = -2487.382840 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05702 -37.52494 -35.64950 -33.09420 -32.55642 -30.57234 -26.68068 -25.29532 -22.70820 -22.11582 -20.64220 -19.81892 -18.69521 -17.27495 -16.78094 -15.66767 -15.03244 -14.71185 -14.22010 -13.92259 -13.57068 -13.32755 -12.78673 -12.64576 -12.03808 -11.57208 -11.46561 -11.26557 -11.17697 -10.83163 -10.54823 -10.49430 -9.91420 -9.68406 -9.65617 -9.56705 -9.33975 -8.92489 -8.64816 -8.35433 -6.17125 -4.18088 3.08358 3.20311 3.33368 3.34891 3.78910 4.24755 4.32477 4.92331 5.06969 5.14504 5.27725 5.33911 5.40287 5.45467 5.68231 5.77379 5.94504 5.98907 6.06755 6.14224 6.17884 6.25419 6.42074 6.43253 6.67881 6.72996 6.88122 7.01293 7.25138 7.32516 7.63287 7.81772 8.36855 8.66939 8.83418 9.44034 10.93890 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.013409 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.397082 B = 2087.580698 C = 2935.954616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.089 0.911 9 C 0.005 3.995 10 H 0.036 0.964 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.136 4.136 14 C 0.519 3.481 15 O -0.576 6.576 16 N -0.718 5.718 17 C 0.181 3.819 18 H 0.079 0.921 19 C -0.134 4.134 20 C -0.196 4.196 21 C -0.185 4.185 22 H 0.265 0.735 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.393 0.607 30 H 0.150 0.850 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -4.760 -1.085 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.106 0.894 9 C -0.015 4.015 10 H 0.054 0.946 11 C -0.163 4.163 12 C -0.155 4.155 13 C -0.176 4.176 14 C 0.306 3.694 15 O -0.457 6.457 16 N -0.372 5.372 17 C 0.078 3.922 18 H 0.097 0.903 19 C -0.152 4.152 20 C -0.233 4.233 21 C -0.222 4.222 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.167 0.833 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.921 -4.580 -1.013 8.360 hybrid contribution 0.305 0.952 0.342 1.057 sum 7.226 -3.627 -0.671 8.113 Atomic orbital electron populations 1.69869 1.06200 1.27091 1.50244 1.24984 0.94641 0.98890 0.94259 0.86971 0.80367 0.83933 0.78093 1.20383 1.22298 1.18876 1.21095 0.88005 0.94668 1.51547 0.89367 1.19314 0.97372 0.91081 0.93755 0.94559 1.21669 0.92073 1.01528 1.00991 1.21353 0.97124 0.95105 1.01943 1.21959 1.02678 0.99365 0.93556 1.20522 0.83531 0.76029 0.89358 1.90676 1.26389 1.56783 1.71891 1.46617 1.09040 1.64940 1.16599 1.20844 0.78950 0.97762 0.94691 0.90347 1.23047 1.02850 0.94161 0.95169 1.23014 1.02629 0.92673 1.04958 1.22842 1.02178 1.03616 0.93594 0.92544 0.92691 0.92042 0.92278 0.91684 0.89417 0.89327 0.76688 0.83287 0.89626 0.89115 0.88724 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.96 55.43 0.77 -24.77 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.88 20.75 24.64 -169.99 -4.19 16.56 16 4 H -0.28 -6.39 6.85 56.52 0.39 -6.00 16 5 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.13 6.39 56.52 0.36 -5.77 16 7 C -0.52 -12.68 8.16 -34.44 -0.28 -12.96 16 8 H 0.09 2.26 5.51 -52.49 -0.29 1.97 16 9 C 0.00 0.09 1.43 -92.40 -0.13 -0.04 16 10 H 0.04 0.83 6.70 -51.93 -0.35 0.49 16 11 C -0.13 -2.41 4.14 -27.96 -0.12 -2.53 16 12 C -0.12 -1.95 5.67 -27.31 -0.15 -2.11 16 13 C -0.14 -2.08 5.56 -27.50 -0.15 -2.24 16 14 C 0.52 9.41 7.06 -11.26 -0.08 9.33 16 15 O -0.58 -12.22 17.92 5.56 0.10 -12.12 16 16 N -0.72 -12.30 4.87 -53.45 -0.26 -12.56 16 17 C 0.18 3.19 2.48 -67.55 -0.17 3.02 16 18 H 0.08 1.31 6.73 -51.93 -0.35 0.96 16 19 C -0.13 -2.28 5.15 -90.62 -0.47 -2.75 16 20 C -0.20 -2.75 10.10 -26.73 -0.27 -3.02 16 21 C -0.18 -2.77 9.78 -26.73 -0.26 -3.04 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.05 1.16 3.80 -51.93 -0.20 0.96 16 24 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 25 H 0.06 1.06 7.86 -51.93 -0.41 0.66 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 28 H 0.09 1.22 6.79 -51.93 -0.35 0.87 16 29 H 0.39 6.46 5.64 -40.82 -0.23 6.23 16 30 H 0.15 2.89 5.24 -51.93 -0.27 2.62 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.23 5.68 -51.93 -0.29 0.94 16 LS Contribution 257.56 15.07 3.88 3.88 Total: -1.00 -28.66 257.56 -6.33 -34.99 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.45 Total: 8.47 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.18 Total: -14.45 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.51 Total: -37.34 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.10 Total: -12.12 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.19 Total: 16.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.66 -6.33 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.923 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds