Wall clock time and date at job start Mon Mar 30 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99345 * 2 1 4 4 H 1.48499 * 109.47405 * 95.00530 * 3 2 1 5 5 H 1.48501 * 109.46652 * 215.00449 * 3 2 1 6 6 H 1.48499 * 109.47345 * 335.00123 * 3 2 1 7 7 C 1.37875 * 120.00568 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 170.42064 * 7 2 1 9 9 C 1.50702 * 119.99617 * 350.41222 * 7 2 1 10 10 H 1.09008 * 109.19009 * 54.52058 * 9 7 2 11 11 C 1.51776 * 109.20038 * 295.18468 * 9 7 2 12 12 C 1.51789 * 113.80837 * 172.64335 * 11 9 7 13 13 C 1.53058 * 110.75048 * 66.81976 * 12 11 9 14 14 C 1.51424 * 108.49213 * 275.07478 * 13 12 11 15 15 O 1.21280 * 119.89669 * 251.22115 * 14 13 12 16 16 N 1.33372 * 120.21050 * 71.19150 * 14 13 12 17 17 C 1.47243 * 120.39850 * 0.36988 * 16 14 13 18 18 H 1.09001 * 109.58824 * 168.21264 * 17 16 14 19 19 C 1.52992 * 109.66457 * 47.68728 * 17 16 14 20 20 C 1.53007 * 117.49588 * 122.07729 * 19 17 16 21 21 C 1.52999 * 60.00069 * 252.51361 * 20 19 17 22 22 H 0.96990 * 120.00568 * 0.02562 * 1 2 3 23 23 H 1.08995 * 108.61932 * 293.76358 * 11 9 7 24 24 H 1.09001 * 108.61234 * 51.66937 * 11 9 7 25 25 H 1.09003 * 109.21964 * 187.14173 * 12 11 9 26 26 H 1.09003 * 109.22772 * 306.53137 * 12 11 9 27 27 H 1.09002 * 109.63323 * 34.77422 * 13 12 11 28 28 H 1.08999 * 109.63837 * 155.16883 * 13 12 11 29 29 H 0.97001 * 119.78321 * 180.32586 * 16 14 13 30 30 H 1.08997 * 115.55448 * 267.78985 * 19 17 16 31 31 H 1.08993 * 117.50250 * 0.02562 * 20 19 17 32 32 H 1.09005 * 117.49634 * 145.02252 * 20 19 17 33 33 H 1.09006 * 117.49861 * 252.51615 * 21 20 19 34 34 H 1.08994 * 117.52053 * 107.48023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6023 1.9856 1.3947 5 1 3.4897 1.4732 -0.8032 6 1 1.3975 2.6809 -0.5917 7 6 2.0047 -1.1940 0.0005 8 1 3.0733 -1.2004 -0.1551 9 6 1.2670 -2.4899 0.2185 10 1 0.4568 -2.5674 -0.5067 11 6 0.6852 -2.5034 1.6203 12 6 -0.2290 -3.6840 1.8929 13 6 0.5615 -4.9947 1.8873 14 6 0.6766 -5.4800 0.4575 15 8 0.0509 -6.4546 0.0978 16 7 1.4634 -4.8387 -0.4076 17 6 2.2339 -3.6587 0.0192 18 1 2.9644 -3.4022 -0.7480 19 6 2.9517 -3.9612 1.3359 20 6 4.4752 -3.8204 1.3585 21 6 3.8348 -5.2096 1.3885 22 1 -0.4850 0.8399 -0.0004 23 1 1.5057 -2.5258 2.3374 24 1 0.1180 -1.5848 1.7704 25 1 -0.7019 -3.5544 2.8664 26 1 -0.9993 -3.7270 1.1228 27 1 1.5569 -4.8237 2.2973 28 1 0.0405 -5.7393 2.4891 29 1 1.5289 -5.1521 -1.3232 30 1 2.4076 -3.6913 2.2409 31 1 4.9658 -3.5119 0.4355 32 1 4.9335 -3.4575 2.2785 33 1 3.8717 -5.7607 2.3282 34 1 3.9038 -5.8156 0.4851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709950158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:38 Heat of formation + Delta-G solvation = -6.017164 kcal Electronic energy + Delta-G solvation = -16290.041612 eV Core-core repulsion = 13802.834438 eV Total energy + Delta-G solvation = -2487.207173 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18017 -37.34813 -34.98412 -33.14483 -32.68828 -30.00335 -26.09040 -25.13293 -22.66266 -22.04076 -21.63437 -19.22022 -18.35908 -17.01093 -16.23688 -15.49204 -15.27456 -14.54773 -14.12605 -13.68868 -13.14170 -13.05089 -12.54430 -12.45537 -12.13484 -11.25164 -11.13330 -11.10390 -11.04546 -10.89543 -10.55574 -10.22385 -9.81486 -9.75313 -9.61005 -9.21083 -9.10214 -8.94406 -8.38054 -8.21221 -6.10898 -4.14232 3.25435 3.31304 3.33203 3.34676 3.84684 4.32982 4.39415 5.02746 5.14489 5.24382 5.30479 5.43355 5.61879 5.74600 5.89609 5.93849 5.97405 6.15757 6.21663 6.29536 6.42063 6.44700 6.46588 6.59581 6.76268 7.09135 7.24903 7.41724 7.62443 7.76011 7.90545 8.01876 8.30669 8.87651 8.91963 9.49918 10.97457 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.010515 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.102623 B = 2662.333060 C = 3128.157770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.042 3.958 10 H 0.041 0.959 11 C -0.116 4.116 12 C -0.111 4.111 13 C -0.163 4.163 14 C 0.529 3.471 15 O -0.583 6.583 16 N -0.714 5.714 17 C 0.172 3.828 18 H 0.086 0.914 19 C -0.163 4.163 20 C -0.168 4.168 21 C -0.191 4.191 22 H 0.262 0.738 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.391 0.609 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -5.349 3.751 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.059 0.941 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.203 4.203 14 C 0.316 3.684 15 O -0.464 6.464 16 N -0.363 5.363 17 C 0.068 3.932 18 H 0.104 0.896 19 C -0.181 4.181 20 C -0.206 4.206 21 C -0.228 4.228 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.226 0.774 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.084 -5.636 3.758 8.470 hybrid contribution 0.478 0.974 -0.348 1.139 sum 5.562 -4.662 3.411 8.019 Atomic orbital electron populations 1.69959 1.05948 1.26753 1.49523 1.24938 0.94722 0.99068 0.94922 0.86686 0.79892 0.83601 0.78291 1.20556 1.19964 1.21428 1.21040 0.94049 0.90441 1.49864 0.92338 1.18801 0.94006 0.91048 0.93860 0.94071 1.21342 0.97614 0.97151 0.99241 1.21310 0.98833 0.93621 1.01128 1.22559 1.04594 0.99439 0.93674 1.20442 0.77481 0.81739 0.88728 1.90651 1.47026 1.28346 1.80394 1.46174 1.45647 1.31264 1.13189 1.21272 0.93600 0.84747 0.93569 0.89597 1.23286 0.92518 1.00813 1.01453 1.22926 0.95711 0.99027 1.02916 1.22945 1.06218 0.91117 1.02504 0.92866 0.93585 0.90229 0.92518 0.92467 0.87163 0.90375 0.77405 0.84898 0.89009 0.89133 0.89421 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.08 12.07 55.43 0.67 -23.41 16 2 C 0.07 1.70 5.09 -17.82 -0.09 1.61 16 3 Si 0.89 20.10 29.55 -169.99 -5.02 15.07 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -12.75 8.32 -34.44 -0.29 -13.04 16 8 H 0.06 1.42 7.67 -52.49 -0.40 1.01 16 9 C 0.04 0.94 1.69 -92.40 -0.16 0.78 16 10 H 0.04 1.07 7.98 -51.92 -0.41 0.65 16 11 C -0.12 -2.42 4.41 -27.97 -0.12 -2.55 16 12 C -0.11 -2.06 5.67 -27.32 -0.15 -2.21 16 13 C -0.16 -2.79 5.53 -27.50 -0.15 -2.94 16 14 C 0.53 10.26 6.67 -11.25 -0.08 10.18 16 15 O -0.58 -13.11 17.92 5.56 0.10 -13.01 16 16 N -0.71 -12.78 4.92 -53.42 -0.26 -13.04 16 17 C 0.17 3.13 2.90 -67.53 -0.20 2.94 16 18 H 0.09 1.56 7.55 -51.93 -0.39 1.17 16 19 C -0.16 -2.59 2.75 -90.62 -0.25 -2.84 16 20 C -0.17 -2.37 10.18 -26.73 -0.27 -2.64 16 21 C -0.19 -2.61 9.48 -26.73 -0.25 -2.86 16 22 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 23 H 0.05 0.90 5.50 -51.93 -0.29 0.61 16 24 H 0.08 1.92 6.55 -51.93 -0.34 1.58 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 27 H 0.11 1.72 3.50 -51.93 -0.18 1.54 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.39 6.48 8.91 -40.82 -0.36 6.12 16 30 H 0.13 2.17 3.40 -51.93 -0.18 1.99 16 31 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 264.45 15.07 3.99 3.99 Total: -1.00 -28.28 264.45 -7.17 -35.45 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.63 Total: 8.52 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.01 Total: -13.56 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.41 Total: -36.45 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.10 Total: -13.01 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.28 -7.17 -35.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.433 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds