Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99345 * 2 1 4 4 H 1.48499 * 109.47405 * 95.00530 * 3 2 1 5 5 H 1.48501 * 109.46652 * 215.00449 * 3 2 1 6 6 H 1.48499 * 109.47345 * 335.00123 * 3 2 1 7 7 C 1.37875 * 120.00568 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 170.42064 * 7 2 1 9 9 C 1.50702 * 119.99617 * 350.41222 * 7 2 1 10 10 H 1.09008 * 109.19009 * 54.52058 * 9 7 2 11 11 C 1.51776 * 109.20038 * 295.18468 * 9 7 2 12 12 C 1.51789 * 113.80837 * 172.64335 * 11 9 7 13 13 C 1.53058 * 110.75048 * 66.81976 * 12 11 9 14 14 C 1.51424 * 108.49213 * 275.07478 * 13 12 11 15 15 O 1.21280 * 119.89669 * 251.22115 * 14 13 12 16 16 N 1.33372 * 120.21050 * 71.19150 * 14 13 12 17 17 C 1.47243 * 120.39850 * 0.36988 * 16 14 13 18 18 H 1.09001 * 109.58824 * 168.21264 * 17 16 14 19 19 C 1.52992 * 109.66457 * 47.68728 * 17 16 14 20 20 C 1.53007 * 117.49588 * 122.07729 * 19 17 16 21 21 C 1.52999 * 60.00069 * 252.51361 * 20 19 17 22 22 H 0.96990 * 120.00568 * 0.02562 * 1 2 3 23 23 H 1.08995 * 108.61932 * 293.76358 * 11 9 7 24 24 H 1.09001 * 108.61234 * 51.66937 * 11 9 7 25 25 H 1.09003 * 109.21964 * 187.14173 * 12 11 9 26 26 H 1.09003 * 109.22772 * 306.53137 * 12 11 9 27 27 H 1.09002 * 109.63323 * 34.77422 * 13 12 11 28 28 H 1.08999 * 109.63837 * 155.16883 * 13 12 11 29 29 H 0.97001 * 119.78321 * 180.32586 * 16 14 13 30 30 H 1.08997 * 115.55448 * 267.78985 * 19 17 16 31 31 H 1.08993 * 117.50250 * 0.02562 * 20 19 17 32 32 H 1.09005 * 117.49634 * 145.02252 * 20 19 17 33 33 H 1.09006 * 117.49861 * 252.51615 * 21 20 19 34 34 H 1.08994 * 117.52053 * 107.48023 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6023 1.9856 1.3947 5 1 3.4897 1.4732 -0.8032 6 1 1.3975 2.6809 -0.5917 7 6 2.0047 -1.1940 0.0005 8 1 3.0733 -1.2004 -0.1551 9 6 1.2670 -2.4899 0.2185 10 1 0.4568 -2.5674 -0.5067 11 6 0.6852 -2.5034 1.6203 12 6 -0.2290 -3.6840 1.8929 13 6 0.5615 -4.9947 1.8873 14 6 0.6766 -5.4800 0.4575 15 8 0.0509 -6.4546 0.0978 16 7 1.4634 -4.8387 -0.4076 17 6 2.2339 -3.6587 0.0192 18 1 2.9644 -3.4022 -0.7480 19 6 2.9517 -3.9612 1.3359 20 6 4.4752 -3.8204 1.3585 21 6 3.8348 -5.2096 1.3885 22 1 -0.4850 0.8399 -0.0004 23 1 1.5057 -2.5258 2.3374 24 1 0.1180 -1.5848 1.7704 25 1 -0.7019 -3.5544 2.8664 26 1 -0.9993 -3.7270 1.1228 27 1 1.5569 -4.8237 2.2973 28 1 0.0405 -5.7393 2.4891 29 1 1.5289 -5.1521 -1.3232 30 1 2.4076 -3.6913 2.2409 31 1 4.9658 -3.5119 0.4355 32 1 4.9335 -3.4575 2.2785 33 1 3.8717 -5.7607 2.3282 34 1 3.9038 -5.8156 0.4851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709950158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -23.581033 kcal Electronic energy + Delta-G solvation = -16290.803238 eV Core-core repulsion = 13802.834438 eV Total energy + Delta-G solvation = -2487.968800 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67479 -38.84952 -36.44136 -34.76817 -34.38606 -31.74399 -27.64986 -26.87322 -24.25853 -23.27355 -23.00155 -20.70216 -19.92556 -18.68642 -17.89476 -17.06745 -16.77121 -16.19503 -15.72513 -15.10631 -14.68250 -14.55129 -14.19874 -14.03122 -13.70006 -12.86796 -12.79410 -12.69294 -12.54063 -12.28621 -12.09255 -11.96047 -11.47048 -11.25929 -10.92708 -10.82924 -10.66945 -10.52865 -10.29294 -9.79635 -8.08347 -6.16677 1.45573 1.47951 1.55063 1.76946 2.40498 2.53719 3.11784 3.23358 3.75374 3.79938 4.05762 4.17846 4.27183 4.28191 4.53578 4.57226 4.73582 4.83642 4.88036 4.90580 4.98279 5.12796 5.13878 5.26262 5.38111 5.52984 5.55558 5.69926 5.89189 5.97029 6.11592 6.33814 6.52819 6.96097 7.38189 7.50771 8.99587 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.010515 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.102623 B = 2662.333060 C = 3128.157770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.295 1.295 7 C -0.519 4.519 8 H 0.064 0.936 9 C 0.042 3.958 10 H -0.006 1.006 11 C -0.108 4.108 12 C -0.104 4.104 13 C -0.155 4.155 14 C 0.523 3.477 15 O -0.617 6.617 16 N -0.707 5.707 17 C 0.181 3.819 18 H 0.086 0.914 19 C -0.185 4.185 20 C -0.160 4.160 21 C -0.172 4.172 22 H 0.258 0.742 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.396 0.604 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -5.904 5.044 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.222 1.222 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.023 3.977 10 H 0.012 0.988 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.193 4.193 14 C 0.311 3.689 15 O -0.501 6.501 16 N -0.355 5.355 17 C 0.078 3.922 18 H 0.105 0.895 19 C -0.203 4.203 20 C -0.198 4.198 21 C -0.209 4.209 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.151 0.849 28 H 0.114 0.886 29 H 0.231 0.769 30 H 0.150 0.850 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.101 -6.185 5.046 10.683 hybrid contribution -0.139 1.152 -0.811 1.416 sum 6.962 -5.033 4.234 9.577 Atomic orbital electron populations 1.70103 1.07429 1.27089 1.51232 1.25659 0.95300 1.02219 0.95074 0.85757 0.78752 0.79827 0.78437 1.19917 1.19057 1.22170 1.21421 0.94403 0.91417 1.48503 0.91743 1.18716 0.93368 0.92141 0.93478 0.98806 1.21188 0.98083 0.96534 0.98772 1.21206 0.97876 0.93623 1.01470 1.22567 1.05825 0.98565 0.92391 1.20889 0.76919 0.81251 0.89796 1.90634 1.48329 1.29982 1.81160 1.46157 1.45185 1.30694 1.13463 1.21037 0.92543 0.83263 0.95351 0.89543 1.23092 0.93743 1.03961 0.99512 1.23035 0.93726 0.99172 1.03840 1.23005 1.03686 0.90631 1.03547 0.93298 0.91608 0.93905 0.89997 0.95316 0.84921 0.88624 0.76891 0.84991 0.89020 0.87385 0.87256 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.51 12.07 21.45 0.26 -51.25 16 2 C 0.02 0.85 5.09 84.65 0.43 1.28 16 3 Si 0.95 41.18 29.55 68.60 2.03 43.21 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.30 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.52 -25.64 8.32 25.60 0.21 -25.43 16 8 H 0.06 3.05 7.67 -2.91 -0.02 3.02 16 9 C 0.04 1.90 1.69 -11.94 -0.02 1.88 16 10 H -0.01 -0.34 7.98 -2.38 -0.02 -0.36 16 11 C -0.11 -4.51 4.41 29.79 0.13 -4.37 16 12 C -0.10 -3.77 5.67 30.22 0.17 -3.60 16 13 C -0.15 -4.94 5.53 30.10 0.17 -4.78 16 14 C 0.52 19.78 6.67 88.11 0.59 20.37 16 15 O -0.62 -27.43 17.92 -3.03 -0.05 -27.49 16 16 N -0.71 -24.88 4.92 -442.08 -2.17 -27.06 16 17 C 0.18 6.45 2.90 44.84 0.13 6.58 16 18 H 0.09 3.05 7.55 -2.39 -0.02 3.03 16 19 C -0.19 -5.38 2.75 -10.79 -0.03 -5.41 16 20 C -0.16 -3.92 10.18 30.60 0.31 -3.61 16 21 C -0.17 -4.04 9.48 30.60 0.29 -3.75 16 22 H 0.26 13.97 8.31 -92.72 -0.77 13.20 16 23 H 0.07 2.46 5.50 -2.39 -0.01 2.45 16 24 H 0.04 2.10 6.55 -2.39 -0.02 2.08 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.03 1.19 7.86 -2.39 -0.02 1.17 16 27 H 0.13 3.69 3.50 -2.39 -0.01 3.68 16 28 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.40 13.02 8.91 -92.71 -0.83 12.20 16 30 H 0.13 3.87 3.40 -2.39 -0.01 3.87 16 31 H 0.09 2.26 8.04 -2.39 -0.02 2.24 16 32 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -61.44 264.45 2.73 -58.72 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.28 Total: 24.69 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 2.38 Total: -20.82 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.91 Total: -78.30 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -61.44 2.73 -58.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.136 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds