Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99669 * 2 1 4 4 H 1.48498 * 109.47086 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47277 * 30.00085 * 3 2 1 6 6 H 1.48505 * 109.46692 * 149.99679 * 3 2 1 7 7 C 1.37874 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.18882 * 300.00009 * 9 7 2 11 11 C 1.51772 * 109.19401 * 59.32801 * 9 7 2 12 12 C 1.51709 * 113.86002 * 187.37072 * 11 9 7 13 13 C 1.53060 * 110.71399 * 293.15631 * 12 11 9 14 14 C 1.51415 * 108.49530 * 84.90826 * 13 12 11 15 15 O 1.21283 * 119.88927 * 108.74665 * 14 13 12 16 16 N 1.33376 * 120.22098 * 288.76612 * 14 13 12 17 17 C 1.47192 * 120.42664 * 359.71976 * 16 14 13 18 18 H 1.09002 * 109.73882 * 191.78961 * 17 16 14 19 19 C 1.53007 * 109.60247 * 312.20090 * 17 16 14 20 20 C 1.52995 * 117.49655 * 220.66800 * 19 17 16 21 21 C 1.52995 * 117.49698 * 152.04580 * 19 17 16 22 22 H 0.97000 * 119.99703 * 0.02562 * 1 2 3 23 23 H 1.09001 * 108.61625 * 308.43786 * 11 9 7 24 24 H 1.09007 * 108.61739 * 66.19565 * 11 9 7 25 25 H 1.08995 * 109.24244 * 172.83502 * 12 11 9 26 26 H 1.08997 * 109.19648 * 53.44727 * 12 11 9 27 27 H 1.09005 * 109.62913 * 325.20500 * 13 12 11 28 28 H 1.08999 * 109.79614 * 204.71026 * 13 12 11 29 29 H 0.97001 * 119.78407 * 179.73806 * 16 14 13 30 30 H 1.08999 * 115.54892 * 6.37638 * 19 17 16 31 31 H 1.08998 * 117.50279 * 0.02562 * 20 19 17 32 32 H 1.08997 * 117.49827 * 145.02070 * 20 19 17 33 33 H 1.09000 * 117.50238 * 214.97619 * 21 19 17 34 34 H 1.09004 * 117.50010 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6258 -2.5519 0.8918 11 6 0.3688 -2.5660 -1.2326 12 6 -0.5706 -3.7571 -1.2513 13 6 0.2152 -5.0644 -1.3785 14 6 0.6547 -5.4972 0.0043 15 8 0.1362 -6.4596 0.5296 16 7 1.6096 -4.8233 0.6468 17 6 2.2508 -3.6571 0.0181 18 1 3.1334 -3.3696 0.5895 19 6 2.6580 -4.0056 -1.4150 20 6 4.0124 -3.4935 -1.9088 21 6 2.7197 -2.8622 -2.4297 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2263 -1.6542 -1.2845 24 1 1.0071 -2.6119 -2.1151 25 1 -1.2518 -3.6641 -2.0971 26 1 -1.1471 -3.7734 -0.3264 27 1 1.0908 -4.9055 -2.0081 28 1 -0.4180 -5.8343 -1.8194 29 1 1.8836 -5.1039 1.5341 30 1 2.3265 -4.9799 -1.7741 31 1 4.6137 -2.9086 -1.2128 32 1 4.5725 -4.1309 -2.5930 33 1 2.4293 -3.0843 -3.4565 34 1 2.4707 -1.8616 -2.0762 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709950160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -6.809006 kcal Electronic energy + Delta-G solvation = -16489.331610 eV Core-core repulsion = 14002.090100 eV Total energy + Delta-G solvation = -2487.241510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82604 -39.16036 -35.81770 -35.09142 -34.29955 -31.58574 -27.85428 -26.98636 -24.49920 -23.35027 -22.42249 -20.61631 -19.89357 -18.85957 -17.97297 -17.16241 -16.54987 -16.23856 -15.61317 -14.91703 -14.71948 -14.52766 -14.12809 -13.97663 -13.63923 -13.05606 -12.80547 -12.70717 -12.38643 -12.15294 -11.99086 -11.86575 -11.39411 -11.24107 -10.76960 -10.74590 -10.63884 -10.40071 -10.04707 -9.70782 -8.01332 -6.15268 1.45471 1.49006 1.55712 1.71659 2.42267 2.55940 3.09232 3.23787 3.66458 3.97063 4.13325 4.24156 4.40421 4.41122 4.45446 4.61968 4.78236 4.85524 4.96984 5.04335 5.09576 5.20948 5.26763 5.46344 5.48217 5.69788 5.72157 5.74446 5.92852 6.08386 6.26503 6.41242 6.54256 6.96030 7.34081 7.51373 9.00384 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.010877 C = 0.009658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.132176 B = 2573.585128 C = 2898.484325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.045 3.955 10 H -0.018 1.018 11 C -0.144 4.144 12 C -0.099 4.099 13 C -0.160 4.160 14 C 0.517 3.483 15 O -0.616 6.616 16 N -0.707 5.707 17 C 0.177 3.823 18 H 0.088 0.912 19 C -0.180 4.180 20 C -0.170 4.170 21 C -0.174 4.174 22 H 0.257 0.743 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.397 0.603 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 -4.796 -5.923 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.026 3.974 10 H 0.001 0.999 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.199 4.199 14 C 0.306 3.694 15 O -0.500 6.500 16 N -0.355 5.355 17 C 0.074 3.926 18 H 0.107 0.893 19 C -0.198 4.198 20 C -0.207 4.207 21 C -0.210 4.210 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.156 0.844 28 H 0.112 0.888 29 H 0.233 0.767 30 H 0.144 0.856 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.788 -5.072 -5.839 9.660 hybrid contribution -0.040 1.073 0.961 1.441 sum 5.748 -3.999 -4.879 8.534 Atomic orbital electron populations 1.70025 1.07265 1.26795 1.51285 1.25621 0.95338 1.01975 0.95276 0.85761 0.78754 0.80110 0.78249 1.19895 1.22267 1.19217 1.21377 0.93090 0.90827 1.49571 0.91739 1.18718 0.92802 0.91978 0.93901 0.99946 1.21802 0.98638 0.96867 1.00755 1.21128 0.98200 0.94036 1.00307 1.22785 1.04440 0.99087 0.93565 1.21011 0.77962 0.80963 0.89498 1.90636 1.57680 1.30781 1.70886 1.46109 1.38083 1.31035 1.20268 1.21120 0.95442 0.83689 0.92399 0.89348 1.22910 1.02582 0.99652 0.94648 1.23186 0.90354 1.03482 1.03685 1.23293 1.00328 0.99416 0.98009 0.93332 0.92088 0.88803 0.90645 0.96144 0.84379 0.88840 0.76714 0.85604 0.89508 0.87258 0.87682 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.86 11.20 21.45 0.24 -49.62 16 2 C 0.02 0.85 5.26 84.65 0.45 1.30 16 3 Si 0.94 40.42 29.54 68.60 2.03 42.45 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.51 -24.38 6.19 25.60 0.16 -24.22 16 8 H 0.06 2.95 7.60 -2.91 -0.02 2.92 16 9 C 0.05 2.02 1.73 -11.95 -0.02 1.99 16 10 H -0.02 -0.95 8.05 -2.39 -0.02 -0.96 16 11 C -0.14 -6.03 4.12 29.77 0.12 -5.91 16 12 C -0.10 -3.71 5.67 30.19 0.17 -3.54 16 13 C -0.16 -5.23 5.43 30.10 0.16 -5.07 16 14 C 0.52 19.84 6.63 88.10 0.58 20.43 16 15 O -0.62 -27.65 17.92 -3.04 -0.05 -27.70 16 16 N -0.71 -25.12 5.14 -442.18 -2.27 -27.40 16 17 C 0.18 6.31 3.07 44.86 0.14 6.45 16 18 H 0.09 3.09 7.62 -2.39 -0.02 3.07 16 19 C -0.18 -5.28 3.41 -10.79 -0.04 -5.32 16 20 C -0.17 -4.36 10.18 30.59 0.31 -4.05 16 21 C -0.17 -5.11 6.90 30.59 0.21 -4.90 16 22 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 23 H 0.06 3.05 5.69 -2.39 -0.01 3.03 16 24 H 0.09 3.50 3.30 -7.93 -0.03 3.48 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.02 0.86 7.86 -2.39 -0.02 0.84 16 27 H 0.14 3.90 3.51 -2.38 -0.01 3.89 16 28 H 0.09 2.77 8.13 -2.39 -0.02 2.75 16 29 H 0.40 13.07 8.91 -92.71 -0.83 12.25 16 30 H 0.13 3.38 5.01 -2.39 -0.01 3.37 16 31 H 0.09 2.33 8.12 -2.39 -0.02 2.31 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.11 4.08 4.70 -2.39 -0.01 4.07 16 Total: -1.00 -59.77 254.97 2.46 -57.31 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.28 Total: 27.80 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 2.25 Total: -22.84 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.03 Total: -77.02 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -59.77 2.46 -57.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.499 kcal (2) G-P(sol) polarization free energy of solvation -59.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds