Wall clock time and date at job start Mon Mar 30 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47216 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46975 * 120.00108 * 3 2 1 6 6 H 1.48499 * 109.47526 * 240.00270 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.24264 * 9 7 2 12 12 C 1.46503 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.08997 * 113.18937 * 22.34527 * 12 11 9 14 14 C 1.55706 * 114.07914 * 249.45638 * 12 11 9 15 15 C 1.50253 * 84.11967 * 209.74865 * 14 12 11 16 16 H 1.08989 * 112.22100 * 283.12067 * 15 14 12 17 17 C 1.51392 * 125.29105 * 141.24552 * 15 14 12 18 18 C 1.54059 * 106.08421 * 200.22288 * 17 15 14 19 19 C 1.52341 * 112.60610 * 56.03239 * 18 17 15 20 20 C 1.53504 * 111.62934 * 306.37716 * 19 18 17 21 21 C 1.50304 * 114.07592 * 155.00190 * 12 11 9 22 22 H 1.08998 * 112.92406 * 36.46884 * 21 12 11 23 23 H 0.96993 * 120.00036 * 174.89669 * 1 2 3 24 24 H 0.96996 * 119.99987 * 0.02562 * 11 9 7 25 25 H 1.08994 * 114.08446 * 323.54083 * 14 12 11 26 26 H 1.09004 * 114.08029 * 95.95943 * 14 12 11 27 27 H 1.09003 * 110.12215 * 319.36296 * 17 15 14 28 28 H 1.08998 * 110.12443 * 80.95681 * 17 15 14 29 29 H 1.09006 * 108.86068 * 176.83312 * 18 17 15 30 30 H 1.08995 * 108.85946 * 295.22740 * 18 17 15 31 31 H 1.08996 * 108.90079 * 67.52448 * 19 18 17 32 32 H 1.08998 * 108.90482 * 186.13343 * 19 18 17 33 33 H 1.09002 * 110.43500 * 299.03545 * 20 19 18 34 34 H 1.09002 * 109.63272 * 177.30821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6966 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3701 -0.0241 12 6 5.6113 -2.3721 0.0787 13 1 6.0045 -1.5133 0.6227 14 6 6.3421 -2.6675 -1.2641 15 6 7.4037 -3.2558 -0.3783 16 1 8.0142 -2.4891 0.0984 17 6 8.1970 -4.5098 -0.6784 18 6 8.7531 -4.9968 0.6733 19 6 7.6595 -5.2209 1.7099 20 6 6.7763 -3.9768 1.8788 21 6 6.1939 -3.6894 0.5083 22 1 5.6562 -4.5449 0.0997 23 1 -0.4850 -0.8366 -0.0747 24 1 3.6738 -3.1999 -0.1840 25 1 5.8350 -3.3969 -1.8954 26 1 6.6579 -1.7749 -1.8043 27 1 7.5471 -5.2699 -1.1122 28 1 9.0147 -4.2818 -1.3621 29 1 9.2879 -5.9337 0.5174 30 1 9.4529 -4.2533 1.0548 31 1 7.0453 -6.0657 1.3981 32 1 8.1236 -5.4566 2.6676 33 1 7.3725 -3.1304 2.2197 34 1 5.9782 -4.1881 2.5904 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712548641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:42 Heat of formation + Delta-G solvation = -40.973681 kcal Electronic energy + Delta-G solvation = -15475.401094 eV Core-core repulsion = 12986.678092 eV Total energy + Delta-G solvation = -2488.723002 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66937 -37.49092 -34.82514 -32.84400 -31.91869 -30.65340 -26.64089 -25.78780 -23.66860 -21.09198 -20.50869 -20.06095 -19.30127 -17.88367 -15.64393 -15.34620 -14.73791 -14.67479 -14.03262 -13.62931 -13.56244 -13.12470 -12.67050 -12.47158 -12.19838 -11.98198 -11.80596 -11.57697 -11.12019 -11.01297 -10.81870 -10.58136 -10.34326 -10.15790 -9.89954 -9.24715 -9.13576 -8.93766 -7.89385 -7.81687 -6.95037 -4.89338 3.61402 3.71674 4.10602 4.27166 4.36628 4.50992 4.65406 4.75382 4.84748 5.06182 5.13971 5.17745 5.32659 5.43443 5.51898 5.64400 5.68002 5.75057 5.84171 5.91717 6.01121 6.04366 6.08210 6.16498 6.24171 6.32180 6.40619 6.54674 6.73645 7.55404 7.75000 7.81057 8.15040 8.87446 9.13316 10.11384 10.36684 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055719 B = 0.006474 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.398105 B = 4323.839954 C = 4447.524212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.060 3.940 3 Si 1.131 2.869 4 H -0.323 1.323 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.600 4.600 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.620 6.620 11 N -0.744 5.744 12 C 0.152 3.848 13 H 0.110 0.890 14 C -0.141 4.141 15 C -0.128 4.128 16 H 0.087 0.913 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.132 4.132 22 H 0.087 0.913 23 H 0.276 0.724 24 H 0.386 0.614 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.226 -10.405 0.205 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.157 4.157 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.513 6.513 11 N -0.392 5.392 12 C 0.045 3.955 13 H 0.128 0.872 14 C -0.180 4.180 15 C -0.147 4.147 16 H 0.105 0.895 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.151 4.151 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.219 0.781 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.388 -8.179 0.433 16.556 hybrid contribution -0.107 -2.513 -0.180 2.522 sum 14.281 -10.693 0.253 17.842 Atomic orbital electron populations 1.70653 1.07628 1.31940 1.36058 1.27158 0.95320 1.05025 0.88210 0.82359 0.71354 0.70732 0.79109 1.25520 1.20849 1.21896 1.22066 0.90130 0.96265 1.55132 0.91296 1.18468 0.88664 0.81567 0.75277 1.90127 1.70736 1.31322 1.59124 1.45737 1.04703 1.10632 1.78134 1.21903 0.82224 0.96525 0.94871 0.87187 1.23112 0.96826 1.00485 0.97574 1.22239 0.95070 0.97387 1.00010 0.89465 1.21252 0.99281 0.96582 0.96481 1.21506 0.97943 1.00673 0.95225 1.21415 0.97274 0.98081 0.98446 1.21295 0.98391 0.97629 0.96856 1.23045 0.97265 0.98584 0.96220 0.89461 0.91280 0.78119 0.90170 0.91657 0.91988 0.92219 0.92573 0.92404 0.92374 0.92428 0.91655 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.54 13.64 55.55 0.76 -23.78 16 2 C 0.06 1.77 5.52 -17.37 -0.10 1.67 16 3 Si 1.13 30.51 25.99 -169.99 -4.42 26.09 16 4 H -0.32 -8.37 7.11 56.52 0.40 -7.97 16 5 H -0.28 -7.81 6.78 56.52 0.38 -7.42 16 6 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 7 C -0.60 -17.25 9.96 -35.64 -0.36 -17.60 16 8 H 0.07 1.95 8.05 -52.49 -0.42 1.53 16 9 C 0.55 14.92 7.57 -12.98 -0.10 14.82 16 10 O -0.62 -18.10 11.66 5.20 0.06 -18.04 16 11 N -0.74 -15.98 5.38 -58.80 -0.32 -16.30 16 12 C 0.15 2.74 4.06 -71.55 -0.29 2.45 16 13 H 0.11 2.22 7.43 -51.93 -0.39 1.83 16 14 C -0.14 -2.15 7.77 -30.22 -0.23 -2.39 16 15 C -0.13 -1.65 3.05 -94.84 -0.29 -1.93 16 16 H 0.09 1.14 7.95 -51.94 -0.41 0.72 16 17 C -0.10 -1.04 6.12 -26.99 -0.17 -1.21 16 18 C -0.12 -1.13 5.77 -26.52 -0.15 -1.28 16 19 C -0.11 -1.18 5.80 -26.81 -0.16 -1.34 16 20 C -0.10 -1.31 6.04 -27.15 -0.16 -1.47 16 21 C -0.13 -1.85 2.88 -94.52 -0.27 -2.12 16 22 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 23 H 0.28 7.80 8.72 -40.82 -0.36 7.44 16 24 H 0.39 7.48 8.73 -40.82 -0.36 7.13 16 25 H 0.08 1.18 8.13 -51.93 -0.42 0.75 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.83 7.98 -51.93 -0.41 0.41 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -31.30 272.36 -7.47 -38.77 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.38 Total: -0.43 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.27 Total: -10.41 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.44 Total: -40.08 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.06 Total: -18.04 kcal Atomic # 14 Polarization: 30.51 SS G_CDS: -4.42 Total: 26.09 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.30 -7.47 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712548641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.208 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds